Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_C10
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 226 2e-60
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 136 3e-33
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 42 1e-04
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 42 1e-04
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 36 0.005
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 34 0.026
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 27 2.3
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 4.0
SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr 1|||Ma... 26 5.2
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 26 6.9
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 26 6.9
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 25 9.2
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 226 bits (553), Expect = 2e-60
Identities = 103/140 (73%), Positives = 115/140 (82%)
Frame = -1
Query: 579 PRTTARLLDKLVSVFLEEECINPTFILDHPQIMSPLSKYHRDVPGLTERFEVYVAKKEIC 400
P+T +RLLDKLV F+E ECINPTFI+ HPQ+MSPL+KYHR GL ERFE +VA KEIC
Sbjct: 441 PQTCSRLLDKLVGEFIESECINPTFIIGHPQMMSPLAKYHRSDAGLCERFEAFVATKEIC 500
Query: 399 NAYTELNDPATQRERFEEQAKNRAAGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTM 220
NAYTELND QR RFEEQA+ +A GDDE DE FCTALEYGLPPTGGWG+GVDRL M
Sbjct: 501 NAYTELNDIFDQRARFEEQARQKAQGDDEAQIIDENFCTALEYGLPPTGGWGMGVDRLVM 560
Query: 219 FLTDSNNIKEVLLFPAMKPD 160
FLTDSN I+EVLLFP MKP+
Sbjct: 561 FLTDSNTIREVLLFPHMKPE 580
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = -3
Query: 703 MMATLERVLNVNSQHPDKLDTPEANDFLNNLCNTHQIECSPPE 575
M+ LE LN D+L TPEAN FL +LC H +EC+PP+
Sbjct: 400 MIEYLEEKLNTKFPPGDQLHTPEANAFLRDLCAKHGVECAPPQ 442
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 136 bits (329), Expect = 3e-33
Identities = 69/143 (48%), Positives = 91/143 (63%), Gaps = 7/143 (4%)
Frame = -1
Query: 573 TTARLLDKLV-SVFLEEECINPTFILDHPQIMSPLSKYHRDVPGLTE-----RFEVYVAK 412
T A LLDKL S+ L+ +P F+++HP++MSPL+K + G E RFE+Y+
Sbjct: 387 TVAHLLDKLFDSLVLKYNTSSPKFVINHPEVMSPLAKSDIKLYGAVEQRISKRFELYIGG 446
Query: 411 KEICNAYTELNDPATQRERFEEQAKNRAA-GDDETPPTDEAFCTALEYGLPPTGGWGLGV 235
EICNAY E NDP Q +F+ Q +R GDDETP D F ALEYGLPPT GWG+GV
Sbjct: 447 YEICNAYEEENDPVAQYHKFQAQKYDRLQLGDDETPAPDSDFVHALEYGLPPTAGWGMGV 506
Query: 234 DRLTMFLTDSNNIKEVLLFPAMK 166
DRL M +T + I E+L F +++
Sbjct: 507 DRLVMLMTGQSKISEILPFGSLR 529
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -1
Query: 309 PPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSN-NIKEVLLFP 175
PP + + ++Y P GG+GLG++RL FL N N+KE + FP
Sbjct: 388 PPELQWYLDLMKYSNAPHGGFGLGIERLIAFLEGENTNVKETIPFP 433
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 41.5 bits (93), Expect = 1e-04
Identities = 33/111 (29%), Positives = 48/111 (43%)
Frame = -1
Query: 507 FILDHPQIMSPLSKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQRERFEEQAKNRA 328
F H + L K V GL +++ V E+ +++P QR ++ K
Sbjct: 471 FTAPHWDDVHLLEKKPLSVRGL--HYDIVVNGIELGGGSIRIHNPDIQRFVLKDVLKL-- 526
Query: 327 AGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 175
+ T E L G PP GG LG DRL LT++ I+EV+ FP
Sbjct: 527 --PENRYATFEHLIRVLSSGCPPHGGIALGFDRLAALLTNAPGIREVIAFP 575
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 36.3 bits (80), Expect = 0.005
Identities = 22/92 (23%), Positives = 41/92 (44%)
Frame = -1
Query: 450 PGLTERFEVYVAKKEICNAYTELNDPATQRERFEEQAKNRAAGDDETPPTDEAFCTALEY 271
P + ++ ++ +EI + ++DP ER + + G + + A
Sbjct: 488 PRYSNSYDFFMKGQEIMSGAQRIHDPELLVERMKALGVSPDVGLQQ-------YIDAFAI 540
Query: 270 GLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 175
G PP G G+G++R+ MF + NI+ FP
Sbjct: 541 GCPPHAGGGIGLERVVMFYLNLPNIRLASSFP 572
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 33.9 bits (74), Expect = 0.026
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 291 FCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 175
F +YG GG GLG++R +L D ++E LFP
Sbjct: 522 FTEQRKYGTTEHGGCGLGLERFLAWLCDRYTVRECCLFP 560
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 441 TERFEVYVAKKEICNAYTELNDPAT 367
+ER E+++ K E CN + NDP++
Sbjct: 217 SEREELFIKKLEQCNIIFDFNDPSS 241
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 26.6 bits (56), Expect = 4.0
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Frame = -1
Query: 384 LNDPATQRERFEEQAKNRAAGD--------DETPPTDEAFCTALE-YGLPPTGGWGLGVD 232
+ND +RF++ + R GD ++ D+ F + ++ Y TG G +
Sbjct: 435 INDKTMTSKRFDDLSATRKTGDNTKDRKQANKVRRQDQFFISHIQKYASSLTGAKGGQLK 494
Query: 231 RLTMFLTDSNNIKEVLLFPAMKPDDPNKNNTEEEN 127
R T+F N+ KE A+K + KN+ + +N
Sbjct: 495 RQTIFTQGPNSTKESK--QAVKEETSVKNSPKGKN 527
>SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 691 LERVLNVNSQHPDKLDTPEANDFLNNLCNTHQIECSPPEDHREAL 557
+ER LN ++ L P FLN+L T + C PP + AL
Sbjct: 134 VERCLNFAHENLAPL-APSNQKFLNSLELTMSLLCFPPSSYSPAL 177
>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 505
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 253 AGRRQAIF*SCTKRFIGWGSFIVTSSTILGLLFESFA 363
+G +F C K I W S + TS+T + L S A
Sbjct: 343 SGHAPKVFSKCNKHGIPWLSVLATSATAILCLMSSQA 379
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 255 RSAAGHILELYKTLHRLGEFHRHQQHDSWLA 347
R A+G + L LH G+F + ++ +WLA
Sbjct: 592 RDASGKVTSLKLELHLDGDFKKTEKKVTWLA 622
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 276 LELYKTLHRLGEFHRHQQHDSWLALRIFRVVSPGHLIRCRH 398
LE L +L E + HD++ ++F+ V P L C H
Sbjct: 336 LEKEPILQKLNELITYCAHDTYSTHQVFKKVFPQFLEVCPH 376
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,484,446
Number of Sequences: 5004
Number of extensions: 76197
Number of successful extensions: 252
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -