Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_C09
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.4  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    24   1.9  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   4.3  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = -2

Query: 346 LRSYVALKNKQECNLQNNKDAKENSSVDEQELKQRLMKENALLEQKRL 203
           L+  +  + KQ   +     AKE+ +  +Q+L++ L++   +L+ KRL
Sbjct: 405 LQEVIKFRQKQRAEIL----AKEHKAAADQKLEKHLIEYKKMLKIKRL 448


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 191 VDQIQSFLLEQSVFFH 238
           V +I SFL+E+S +FH
Sbjct: 62  VSEILSFLIEESGYFH 77


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 617 DFADWPLDFADWPLDFADW 673
           DF+ WP D     ++F  W
Sbjct: 172 DFSSWPYDTHRCRINFGSW 190



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 638 DFADWPLDFADWPLDFAXW 694
           DF+ WP D     ++F  W
Sbjct: 172 DFSSWPYDTHRCRINFGSW 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,096
Number of Sequences: 438
Number of extensions: 2181
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)