Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_C06
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...    40   0.003
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...    40   0.003
U88165-5|AAK21392.1|  393|Caenorhabditis elegans Downstream of m...    29   3.7  
U34893-1|AAB01720.1|  393|Caenorhabditis elegans DOM-3 protein.        29   3.7  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 713 DLWQVKSGTIFDDFLITDDPAAAK-ERGEVIKKRQEGEKK 597
           DLWQVKSGTIFD+ +ITD    A+    E   K +  EK+
Sbjct: 312 DLWQVKSGTIFDNIIITDSVEEAEAHAAETFDKLKTVEKE 351


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 713 DLWQVKSGTIFDDFLITDDPAAAK-ERGEVIKKRQEGEKK 597
           DLWQVKSGTIFD+ +ITD    A+    E   K +  EK+
Sbjct: 312 DLWQVKSGTIFDNIIITDSVEEAEAHAAETFDKLKTVEKE 351


>U88165-5|AAK21392.1|  393|Caenorhabditis elegans Downstream of mes
           (in same operon)protein 3 protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +2

Query: 152 HVPAHGARPITKH*IITYIN---SERNPHLHGHQYETTDTYLLTHNMSLRIGKIRAKHTH 322
           H+P    +P+     I + N     RNP     Q +    Y + ++  L++G++RAK  H
Sbjct: 28  HIPKITGQPLPNEVQIPFDNMIYETRNPPKFEKQAKFISEYCINYDRKLQLGRMRAKKFH 87


>U34893-1|AAB01720.1|  393|Caenorhabditis elegans DOM-3 protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +2

Query: 152 HVPAHGARPITKH*IITYIN---SERNPHLHGHQYETTDTYLLTHNMSLRIGKIRAKHTH 322
           H+P    +P+     I + N     RNP     Q +    Y + ++  L++G++RAK  H
Sbjct: 28  HIPKITGQPLPNEVQIPFDNMIYETRNPPKFEKQAKFISEYCINYDRKLQLGRMRAKKFH 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,639,504
Number of Sequences: 27780
Number of extensions: 273539
Number of successful extensions: 766
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)