Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_C04
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    29   0.54 
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    28   1.7  
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          26   6.7  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   8.9  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   8.9  

>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +1

Query: 415 RTNALDVLSFXATTTLIRQNVIEHRLTACGIVCV*TMMLQQTAVKKPHSTIMTLDSILVQ 594
           R  A D L    +  L++Q ++E  L    + C   + L  +  + P+   +   + LV 
Sbjct: 272 RLGACDKLLEEGSIILVKQ-ILEKELKELPVACYSIINLHDSLTQFPNLDFILKTTALVL 330

Query: 595 FMLFLHPEF 621
           F++FL P F
Sbjct: 331 FIIFLVPSF 339


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = -1

Query: 569 IIVLCGFFTAV-----CCNIIVYTQTIPHAVSRCSITFCRIKVVVALKDKTSSAFVRSDA 405
           I+ LCGFF A+     C +II + +     V + S+    + +V+       S +     
Sbjct: 5   IVALCGFFVAIALVLSCISIITHLKNYKKPVLQRSVVRILMMIVIYSSVSFLSVYNEKIG 64

Query: 404 PVFESRRRV 378
            +FE  R +
Sbjct: 65  SIFEPFREI 73


>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -2

Query: 724 GPLVLNKERXIHHFCLQLEQCPLVVRRLQ*EYDRRI 617
           GPL++  +       + +E+CP+  + +  EY + I
Sbjct: 256 GPLIIGFQEKGRRRVMDIEECPIATKTINEEYPKII 291


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 227 YHHPAYFRREAVMRFGS 177
           Y HP  FR  AV+ FGS
Sbjct: 249 YFHPHRFRSRAVLEFGS 265


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 266 ITQIIILRV*FLLHDVIPSPWKSIVSI 346
           +T  I+L + F+LHD   S W+S+V I
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,018,717
Number of Sequences: 5004
Number of extensions: 60909
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)