Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_C04
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    31   1.00 
03_05_0850 + 28206166-28206767,28207648-28207891,28208076-282083...    29   5.3  
01_06_1749 - 39636951-39638102                                         28   7.0  
10_01_0355 + 3912019-3913046,3914354-3914678                           28   9.3  

>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -3

Query: 411 RCTGVRIPQAGTNFSNEICTQQMLTIDFHGE 319
           RCTGV I   G N   +I T   +  DFHGE
Sbjct: 159 RCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>03_05_0850 +
           28206166-28206767,28207648-28207891,28208076-28208389,
           28209013-28209067
          Length = 404

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 162 GCPALRTETHYRFTAEIGGVVVLLVRTPKRSYHQSLRKL*FC 287
           GC   R  TH   T+ + G    + + P RS  Q LRKL  C
Sbjct: 356 GCSDGRAATHRWGTSSLAGTTTAVRQGPCRSRGQQLRKLQRC 397


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 148 SIVTTAAPPFEPKRITA 198
           S+ + AAPPF+P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


>10_01_0355 + 3912019-3913046,3914354-3914678
          Length = 450

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +1

Query: 49  AHSPPPDVKWLLEPIDIYNANAPPTSRHKFYGLS 150
           A SPPP + WLL      N  A P     FY LS
Sbjct: 42  AASPPPFLPWLLARPAPINPTAGPGPSLSFYSLS 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,589,517
Number of Sequences: 37544
Number of extensions: 445102
Number of successful extensions: 788
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)