Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_C03
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyce...   113   3e-26
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    50   3e-07
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    28   1.8  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    27   3.1  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    27   4.1  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    26   5.4  
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    26   5.4  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   7.2  
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    26   7.2  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    25   9.5  

>SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 176

 Score =  113 bits (272), Expect = 3e-26
 Identities = 64/175 (36%), Positives = 96/175 (54%), Gaps = 4/175 (2%)
 Frame = -1

Query: 599 LLTFIRAAESDPSLVSLALGQDLTALGLNLNSPDN---LNLTFAGPWADTPCR-PQDMDY 432
           LL  IR  +S+ S  +L LG DL ALG +L   +    ++     PWA+   + P     
Sbjct: 5   LLPIIRMEDSEMS--TLQLGCDLAALGFDLAPVEEDRLISTNLFSPWAELNTKKPVSQPM 62

Query: 431 HVPPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEE 252
              P    N  +    A  ++ ++ ++ LFY+FY    DV+Q AAA EL NR WR+H E 
Sbjct: 63  FKLPACYKN--VNPPPAISKIFQFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHKEL 120

Query: 251 KVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPKEFHLDYSKLEGRPQLPPH 87
           +VW++  PGM  +++T  +ERG Y FFD  +W+++ K+F L Y+ LE R Q   H
Sbjct: 121 RVWLTPVPGMKPLQRTPQFERGYYMFFDPIHWKRIKKDFLLMYAALEDRAQSAVH 175


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = -1

Query: 353 DLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYF 174
           D LFY+FY   G   Q  A  EL  + WR+H +   W  +     M+  T  +E G+Y +
Sbjct: 543 DTLFYMFYYRPGTYQQYIAGQELKKQSWRFHKKYTTWFQRHEEPKMI--TDEFESGSYRY 600

Query: 173 FDAH-NW-RKVPKEFHLDYSKLE 111
           FD   +W ++   +F   Y  LE
Sbjct: 601 FDFEGDWVQRKKADFRFTYQYLE 623


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 212 EKTSTYERGTYYFFDAHNWRKVPKEFHLDYSKLEGR 105
           E    YE    Y++  HN RK+   FHL   +++ R
Sbjct: 553 ELVPLYEGFQNYYYSCHNGRKLSWLFHLSKGEIKAR 588


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 340 ICSTVSLVTFYKLRLQQSYTIANGDIIWRRRCGSHK 233
           I  +V+L   +  RL Q+YT  N  ++     G HK
Sbjct: 298 ILLSVALFALFSSRLSQAYTFTNNALLCCHELGLHK 333


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = -2

Query: 280 IANGDIIWRRRCGSH---KRPACQWS-RRLQRTNAAPTTSSMRTIGERCRK 140
           +A+ D+IW R C  H   K   C W    L+R       +S++   ER  K
Sbjct: 143 LADDDVIWHRMCEQHINRKCEKCGWGLPLLERNTLYAAKASIQKRYERLTK 193


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/64 (25%), Positives = 25/64 (39%)
 Frame = -1

Query: 299 AAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPKEFHLDYS 120
           A+    N   RY    ++WI Q   +P  +  +  +       D   W+K    F +DY 
Sbjct: 2   ASTATQNASTRY---SQIWIDQPASLPFQDSINLIKE------DKEKWKKEKTAFLIDYD 52

Query: 119 KLEG 108
             EG
Sbjct: 53  WFEG 56


>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 470 WADTPCRPQDMDYHVPPEYLINGSIREKLAPLRLGRYKED 351
           WAD P  P D  + +   Y  +G +  K   L  G Y++D
Sbjct: 40  WADVPMGPPDPIFGITEAYKKDGDV--KKMNLGAGTYRDD 77


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 341  YLFYCFVGDVLQIAAAAELYNREWRY 264
            +L  CFV D  Q A AAEL    W Y
Sbjct: 1382 FLKRCFVSDPNQRATAAELLMDPWVY 1407


>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 379 LYDSEDIKKIYYSICSTVSLVTFYKLRLQQSYTIANGD 266
           L+  + + + Y+S+  TVSL+  +K+R  Q  TI  G+
Sbjct: 81  LFMGDYVDRGYHSV-ETVSLLIAFKIRYPQRITILRGN 117


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 253 RRCGSHKRPACQWSRRLQRTNAAPTTSSMRTI 158
           R  G HKR A   + R  +   APTT +  TI
Sbjct: 490 RESGQHKRMASLTNSREMQIQHAPTTFAAETI 521


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,482
Number of Sequences: 5004
Number of extensions: 65941
Number of successful extensions: 204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)