Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_C03
(797 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast... 207 8e-54
U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast... 207 8e-54
U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast... 207 8e-54
U41993-8|AAA83449.1| 497|Caenorhabditis elegans Temporarily ass... 62 4e-10
U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily ass... 62 4e-10
Z92826-9|CAD90172.1| 701|Caenorhabditis elegans Hypothetical pr... 58 7e-09
Z92826-5|CAB07318.1| 198|Caenorhabditis elegans Hypothetical pr... 58 7e-09
AL132860-33|CAB60507.2| 701|Caenorhabditis elegans Hypothetical... 58 7e-09
U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 29 2.9
AF101318-5|AAC69347.1| 574|Caenorhabditis elegans Hypothetical ... 29 2.9
L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with... 28 6.7
L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with... 28 6.7
>U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform c protein.
Length = 317
Score = 207 bits (505), Expect = 8e-54
Identities = 94/186 (50%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Frame = -1
Query: 638 PDTMIPNQFGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLN-SPDNLNLTFAGPWAD 462
P +M+ +QFG+ GL+T++R ++ PS+VSLALG DLT LGLNLN S L + F GPWAD
Sbjct: 49 PASMLDDQFGMAGLVTYLRTVDN-PSIVSLALGYDLTTLGLNLNLSERKLYMNFGGPWAD 107
Query: 461 TPCRPQDMDYHVPPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFVGDVLQIAAAAELY 282
+P R ++D VP EY+ + IR+KL PLRL + ED+LFYLFY ++ Q+AAA ELY
Sbjct: 108 SPIRAHELDVKVPEEYMTHNHIRDKLPPLRLNKVSEDVLFYLFYNCPNEIYQVAAACELY 167
Query: 281 NREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPKEFHLDYSKLEGRP 102
REWR+H E+VW++++ + E+T YE+G Y FD WRK+PKE L+Y +LE RP
Sbjct: 168 AREWRFHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWRKIPKELKLEYKELEDRP 227
Query: 101 QLPPHV 84
++P V
Sbjct: 228 KMPQSV 233
>U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform b protein.
Length = 367
Score = 207 bits (505), Expect = 8e-54
Identities = 94/186 (50%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Frame = -1
Query: 638 PDTMIPNQFGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLN-SPDNLNLTFAGPWAD 462
P +M+ +QFG+ GL+T++R ++ PS+VSLALG DLT LGLNLN S L + F GPWAD
Sbjct: 99 PASMLDDQFGMAGLVTYLRTVDN-PSIVSLALGYDLTTLGLNLNLSERKLYMNFGGPWAD 157
Query: 461 TPCRPQDMDYHVPPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFVGDVLQIAAAAELY 282
+P R ++D VP EY+ + IR+KL PLRL + ED+LFYLFY ++ Q+AAA ELY
Sbjct: 158 SPIRAHELDVKVPEEYMTHNHIRDKLPPLRLNKVSEDVLFYLFYNCPNEIYQVAAACELY 217
Query: 281 NREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPKEFHLDYSKLEGRP 102
REWR+H E+VW++++ + E+T YE+G Y FD WRK+PKE L+Y +LE RP
Sbjct: 218 AREWRFHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWRKIPKELKLEYKELEDRP 277
Query: 101 QLPPHV 84
++P V
Sbjct: 278 KMPQSV 283
>U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform a protein.
Length = 444
Score = 207 bits (505), Expect = 8e-54
Identities = 94/186 (50%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Frame = -1
Query: 638 PDTMIPNQFGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLN-SPDNLNLTFAGPWAD 462
P +M+ +QFG+ GL+T++R ++ PS+VSLALG DLT LGLNLN S L + F GPWAD
Sbjct: 176 PASMLDDQFGMAGLVTYLRTVDN-PSIVSLALGYDLTTLGLNLNLSERKLYMNFGGPWAD 234
Query: 461 TPCRPQDMDYHVPPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFVGDVLQIAAAAELY 282
+P R ++D VP EY+ + IR+KL PLRL + ED+LFYLFY ++ Q+AAA ELY
Sbjct: 235 SPIRAHELDVKVPEEYMTHNHIRDKLPPLRLNKVSEDVLFYLFYNCPNEIYQVAAACELY 294
Query: 281 NREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPKEFHLDYSKLEGRP 102
REWR+H E+VW++++ + E+T YE+G Y FD WRK+PKE L+Y +LE RP
Sbjct: 295 AREWRFHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWRKIPKELKLEYKELEDRP 354
Query: 101 QLPPHV 84
++P V
Sbjct: 355 KMPQSV 360
>U41993-8|AAA83449.1| 497|Caenorhabditis elegans Temporarily
assigned gene nameprotein 153, isoform a protein.
Length = 497
Score = 62.1 bits (144), Expect = 4e-10
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Frame = -1
Query: 587 IRAAESDPSLVSLALGQDLTALGLNLNSPDNLNL----TFAGPWADTPCRPQDMDY---H 429
+R + ++ + +G DL LG+ + + D TFAGP+A P P +M
Sbjct: 165 LRDKIKNENIEMMTIGFDLNELGVPMTTQDTNQKSVWETFAGPFASEPLLPANMGLTYNQ 224
Query: 428 VPPEYLINGSIREKLAPLRL--GRYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHME 255
VP Y +++ L ++ LFY+FY ++ Q+ AA EL R WRY+M+
Sbjct: 225 VPNVYYTARTLQSSFDMLHNIPDKFGVHELFYIFYNLPKELWQLNAARELQYRGWRYNMK 284
Query: 254 EKVWISQAPGMP 219
EK+W+ + G P
Sbjct: 285 EKLWVHKKLGEP 296
>U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily
assigned gene nameprotein 153, isoform b protein.
Length = 733
Score = 62.1 bits (144), Expect = 4e-10
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Frame = -1
Query: 587 IRAAESDPSLVSLALGQDLTALGLNLNSPDNLNL----TFAGPWADTPCRPQDMDY---H 429
+R + ++ + +G DL LG+ + + D TFAGP+A P P +M
Sbjct: 401 LRDKIKNENIEMMTIGFDLNELGVPMTTQDTNQKSVWETFAGPFASEPLLPANMGLTYNQ 460
Query: 428 VPPEYLINGSIREKLAPLRL--GRYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHME 255
VP Y +++ L ++ LFY+FY ++ Q+ AA EL R WRY+M+
Sbjct: 461 VPNVYYTARTLQSSFDMLHNIPDKFGVHELFYIFYNLPKELWQLNAARELQYRGWRYNMK 520
Query: 254 EKVWISQAPGMP 219
EK+W+ + G P
Sbjct: 521 EKLWVHKKLGEP 532
>Z92826-9|CAD90172.1| 701|Caenorhabditis elegans Hypothetical
protein Y56A3A.1a protein.
Length = 701
Score = 58.0 bits (134), Expect = 7e-09
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = -1
Query: 365 RYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERG 186
R D LF++FY G Q+ AA L WR+H + W + + T YE+G
Sbjct: 613 RLAPDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQI--TDDYEQG 670
Query: 185 TYYFFDAHNWRKVPKE-FHLDYSKLEGR 105
TY +FD W + KE F +Y LE +
Sbjct: 671 TYVYFDFEKWSQRKKESFTFEYKFLEDK 698
>Z92826-5|CAB07318.1| 198|Caenorhabditis elegans Hypothetical
protein Y56A3A.1b protein.
Length = 198
Score = 58.0 bits (134), Expect = 7e-09
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = -1
Query: 365 RYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERG 186
R D LF++FY G Q+ AA L WR+H + W + + T YE+G
Sbjct: 110 RLAPDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQI--TDDYEQG 167
Query: 185 TYYFFDAHNWRKVPKE-FHLDYSKLEGR 105
TY +FD W + KE F +Y LE +
Sbjct: 168 TYVYFDFEKWSQRKKESFTFEYKFLEDK 195
>AL132860-33|CAB60507.2| 701|Caenorhabditis elegans Hypothetical
protein Y56A3A.1a protein.
Length = 701
Score = 58.0 bits (134), Expect = 7e-09
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = -1
Query: 365 RYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERG 186
R D LF++FY G Q+ AA L WR+H + W + + T YE+G
Sbjct: 613 RLAPDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQI--TDDYEQG 670
Query: 185 TYYFFDAHNWRKVPKE-FHLDYSKLEGR 105
TY +FD W + KE F +Y LE +
Sbjct: 671 TYVYFDFEKWSQRKKESFTFEYKFLEDK 698
>U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family
protein 11 protein.
Length = 317
Score = 29.5 bits (63), Expect = 2.9
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = +2
Query: 110 PPACCNPNE-TLSAPFSNCAHRRSSRCRVRTLKSSRPLACRALVRSTPSPPYDIAIRDCI 286
PPACC P+E P+ N R S C + +S + + S + + I+ CI
Sbjct: 212 PPACCPPDEHGRLRPYCNTIMRHSHGCYAKIAESFEEVTSHFKIVSWTVVLFAL-IQGCI 270
Query: 287 TLLQPQFVKRHQRNSRTNRIIDLLYIFRVVEALV 388
T P + + S I+ +L IF +V +V
Sbjct: 271 T---PLYRESQIHFSAIFSILVVLTIFDIVLFIV 301
>AF101318-5|AAC69347.1| 574|Caenorhabditis elegans Hypothetical
protein Y73C8C.7 protein.
Length = 574
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 197 TLKSSRPLACRALVRSTPSPPYDIAIRDCITLLQ 298
T K PL C L++ TP PP ++ +C+ L+
Sbjct: 492 TFKEKAPLICAQLLK-TPEPPNELDDNECLVCLE 524
>L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
b protein.
Length = 926
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 273 MAISYGGEGVDLTSARHANGREDFNVRTRHLLLLRCAQLEKGAERVS 133
++++ G+ D ARH G DF R LL + E+GAE S
Sbjct: 313 ISVNMFGKDFDSAKARHGKGNIDFGRRGDDELLSSDEEEEQGAEDAS 359
>L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
a protein.
Length = 960
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 273 MAISYGGEGVDLTSARHANGREDFNVRTRHLLLLRCAQLEKGAERVS 133
++++ G+ D ARH G DF R LL + E+GAE S
Sbjct: 350 ISVNMFGKDFDSAKARHGKGNIDFGRRGDDELLSSDEEEEQGAEDAS 396
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,249,444
Number of Sequences: 27780
Number of extensions: 383250
Number of successful extensions: 1122
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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