Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_C03
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   3.3  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   3.3  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   3.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   7.6  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 140 LSAPFSNCAHRRSSRCRVRTLKSSRP 217
           L  P + C  R   RC   T+  S+P
Sbjct: 126 LEHPVTGCGERTEGRCLHYTVDKSKP 151


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 140 LSAPFSNCAHRRSSRCRVRTLKSSRP 217
           L  P + C  R   RC   T+  S+P
Sbjct: 131 LEHPVTGCGERTEGRCLHYTVDKSKP 156


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 140 LSAPFSNCAHRRSSRCRVRTLKSSRP 217
           L  P + C  R   RC   T+  S+P
Sbjct: 131 LEHPVTGCGERTEGRCLHYTVDKSKP 156


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 283 YNSAAAAICKTSPTKQ*NK*NNRSSLYLPSRRGASFSLIEP 405
           +N +AAAI  TSP+         SS   PS   + FS + P
Sbjct: 69  FNDSAAAITSTSPSYP----GGGSSSPSPSSPSSFFSSVSP 105


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 606 SRSIDFYPCC 577
           SR+ ++YPCC
Sbjct: 223 SRNEEYYPCC 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,228
Number of Sequences: 438
Number of extensions: 4749
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)