Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_C01
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.79 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.4  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   3.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   3.2  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   7.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 352 H*AGFSASLIQFLPATLHPHHH 287
           H  G   S   FLP + HPH H
Sbjct: 300 HSPGVYPSTAGFLPPSYHPHQH 321


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 117 YNNNMIRTKKYNSRAVYIKSM 179
           YNNN + TKK+N++   ++++
Sbjct: 374 YNNNDLDTKKWNNKISALRAL 394


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 93  YNYIFRLPYNNNMIRTKKYNSRAVY 167
           +N  ++  YNNN      YN +  Y
Sbjct: 90  HNNNYKYNYNNNNYNNNNYNKKLYY 114


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 93  YNYIFRLPYNNNMIRTKKYNSRAVY 167
           +N  ++  YNNN      YN +  Y
Sbjct: 90  HNNNYKYNYNNNNYNNNNYNKKLYY 114


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 93  YNYIFRLPYNNNMIRTKKY 149
           YNY  +  YNNN    K Y
Sbjct: 98  YNYNNKYNYNNNNYNKKLY 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,758
Number of Sequences: 438
Number of extensions: 3080
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)