Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_B24
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      31   0.17 
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   4.7  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    26   6.2  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   8.2  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -2

Query: 505 DAFLVKQIRFYLLYSHYSVYFFLFTSFAYSFIFTLKFHVILL 380
           D+ +V    F+  +S +S + FLFTS  ++F F L  H  LL
Sbjct: 101 DSNVVPFFCFFFYFSLFSFFSFLFTSLHFNFFFRLCRHKHLL 142


>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 268

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 87  NQVQLPEWLPYINFIMPTSIESYINKKIYLY---SLAIVKLS*NIN*IDH 227
           + + L E   Y+ F  P SI SY+  K YLY    L +V+L   I  I H
Sbjct: 211 SSILLHELQRYLQF-RPLSISSYLYSKRYLYGPEGLTMVQLLSQIENIQH 259


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 95  YLVLMASYVFGMMSLIVTLKLYAF 24
           ++ + ASYV+G++ L++T   Y F
Sbjct: 292 FIAMFASYVYGILYLVLTTIPYTF 315


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 482 SFLFIIQSL*CVFFFVHEFCLFVYFYFEISCDIINLL 372
           SFLF +  +  V+F       F++F+F   C  ++ L
Sbjct: 134 SFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFL 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,112
Number of Sequences: 5004
Number of extensions: 49075
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)