Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_B24
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine re...    28   7.7  
AF039716-7|AAB96735.3|  617|Caenorhabditis elegans Sodium:neurot...    28   7.7  

>Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 481 RFYLLYSHYSVYFFLFTSFAYSFIFTLKFHVILLIS*DDLFLTF 350
           R Y +Y  +  YFFL T+   S I+T+    + +I+  + FL F
Sbjct: 161 RSYYVYHSHGDYFFLDTTIKRSLIYTILAPTLSVITAMNSFLNF 204


>Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 481 RFYLLYSHYSVYFFLFTSFAYSFIFTLKFHVILLIS*DDLFLTF 350
           R Y +Y  +  YFFL T+   S I+T+    + +I+  + FL F
Sbjct: 161 RSYYVYHSHGDYFFLDTTIKRSLIYTILAPTLSVITAMNSFLNF 204


>AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein78 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = -3

Query: 477 FIYYTV-IIVCIFFCSRVLL 421
           F+YYTV +I+C+FF S + L
Sbjct: 150 FVYYTVRVIICVFFSSILFL 169


>AF039716-7|AAB96735.3|  617|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 1
           protein.
          Length = 617

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 485 NSFLFIIQSL*CVFFFVHEFCLFVYFYF 402
           +  LF +  L C+  F+   CLF+Y+YF
Sbjct: 106 SQILFTMVVLACMTKFLSTLCLFLYYYF 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,994,646
Number of Sequences: 27780
Number of extensions: 269785
Number of successful extensions: 678
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)