Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_B24
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   2.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   4.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.5  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 445 FFLFTSFAYSFIFTLKFHVI 386
           FF+F SFA+ F   ++F V+
Sbjct: 278 FFVFLSFAFIFATIIQFAVV 297


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 477 KRICLTRNASVVYHYKNLRLNMHYTLRRHRSLL 575
           KR  LT   SVV+H+ N R   H +L   + LL
Sbjct: 108 KRPELTNRKSVVFHHDNAR--PHTSLVTRQKLL 138


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 488 TNSFLFIIQSL*CVFFFVHEFCLFVYFYFEISCDIINL 375
           T S +F++    C FF + +  +F+Y  F     + NL
Sbjct: 81  TPSNMFVVNLAICDFFMMIKTPIFIYNSFNTGFALGNL 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,322
Number of Sequences: 438
Number of extensions: 3387
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)