Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_B22
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.63 
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   4.5  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   4.5  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   5.9  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   5.9  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   5.9  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   5.9  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   5.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   5.9  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   7.8  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -3

Query: 543 LSKEEIERMVNEAEKYRNED--DKQKET-IQAQECIGILLLQHEVYH 412
           L + ++E ++ EA+  +N D  DK K+  +    C+  +LL+  +YH
Sbjct: 577 LPEVDVEEILGEAKVLQNFDIKDKNKKVNVAGCRCVKGILLKSGLYH 623


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 663 ACLKLRSPXDIDANGILNVSAIEKSTNKE 577
           AC+ ++   D   N I N+  I KSTN++
Sbjct: 44  ACILIKDLFDNVHNHIQNIFKIIKSTNEK 72


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 663 ACLKLRSPXDIDANGILNVSAIEKSTNKE 577
           AC+ ++   D   N I N+  I KSTN++
Sbjct: 27  ACILIKDLFDNVHNHIQNIFKIIKSTNEK 55


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 565 HYQRQRSSLQGRDRAY 518
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 565 HYQRQRSSLQGRDRAY 518
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 565 HYQRQRSSLQGRDRAY 518
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 565 HYQRQRSSLQGRDRAY 518
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 565 HYQRQRSSLQGRDRAY 518
           HY R+RS  + R+R Y
Sbjct: 219 HYSRERSCSRDRNREY 234


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 565 HYQRQRSSLQGRDRAY 518
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 625 QRYPQRFRYREVHQ-QGEQDHHYQRQRSSLQGRDR 524
           +RY  R R RE +  + E+++   R+RS  + RDR
Sbjct: 270 KRY-SRSREREQNSYKNEREYRKYRERSKERSRDR 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,500
Number of Sequences: 438
Number of extensions: 4061
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)