Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_B20
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 122 8e-29
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 120 2e-28
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 98 1e-21
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 79 7e-16
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 75 9e-15
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 33 0.048
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 31 0.15
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 31 0.25
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 29 0.78
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 29 1.0
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 28 1.4
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 28 1.4
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 2.4
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.1
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 27 3.1
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 27 4.1
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 27 4.1
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 27 4.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.1
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 27 4.1
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 26 5.5
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 26 5.5
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 5.5
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 7.2
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 26 7.2
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 7.2
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 9.6
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ... 25 9.6
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 25 9.6
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 122 bits (293), Expect = 8e-29
Identities = 56/87 (64%), Positives = 72/87 (82%)
Frame = -1
Query: 638 EVTXDIDANGILNVSAIEKSTNKENQITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKE 459
EVT D+DANGILNVSA+EK T K +ITITNDKGRLSKEEI+RMV+EAEKY+ ED+ +
Sbjct: 473 EVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVSEAEKYKAEDEAETS 532
Query: 458 TIQAKNALESYCFSMKSTMEDEKLQGK 378
IQAKN LESY +S++++++D L+ K
Sbjct: 533 RIQAKNHLESYAYSLRNSLDDPNLKDK 559
Score = 63.7 bits (148), Expect = 3e-11
Identities = 28/52 (53%), Positives = 37/52 (71%)
Frame = -2
Query: 385 KEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKM 230
K+K+ SDK+ I +TI+WLD N A K+EYE KQKELEG+ NPI+ K+
Sbjct: 557 KDKVDASDKEAIDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKI 608
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 120 bits (289), Expect = 2e-28
Identities = 56/87 (64%), Positives = 71/87 (81%)
Frame = -1
Query: 638 EVTXDIDANGILNVSAIEKSTNKENQITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKE 459
EVT D+DANGILNVSA+EK T K +ITITNDKGRLSKEEI+RMV EAEKY+ ED+ +
Sbjct: 473 EVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVAEAEKYKAEDEAESG 532
Query: 458 TIQAKNALESYCFSMKSTMEDEKLQGK 378
IQAKN LESY +S++++++D L+ K
Sbjct: 533 RIQAKNHLESYAYSLRNSLDDPNLKDK 559
Score = 62.9 bits (146), Expect = 5e-11
Identities = 27/52 (51%), Positives = 38/52 (73%)
Frame = -2
Query: 385 KEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKM 230
K+K+ SDK+T+ +TI+WLDSN A K+E+E KQKELE + NPI+ K+
Sbjct: 557 KDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKI 608
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 97.9 bits (233), Expect = 1e-21
Identities = 48/89 (53%), Positives = 66/89 (74%), Gaps = 2/89 (2%)
Frame = -1
Query: 638 EVTXDIDANGILNVSAIEKS-TNKENQITITNDKGRLSKEEIERMVNEAEKYRNEDDKQK 462
EVT ++DANG+L VSA++KS K ++ I NDKGRLS+E+IERMV EAE++ ED K
Sbjct: 502 EVTFEVDANGVLTVSAVDKSGKGKPEKLVIKNDKGRLSEEDIERMVKEAEEFAEEDKILK 561
Query: 461 ETIQAKNALESYCFSMKSTM-EDEKLQGK 378
E I+A+N LE+Y +S+K +DE+L GK
Sbjct: 562 ERIEARNTLENYAYSLKGQFDDDEQLGGK 590
Score = 43.6 bits (98), Expect = 3e-05
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = -2
Query: 379 KISDSDKQTILDKCNDTIKWLD-SNQLADKEEYEHKQKELEGIYNPIITKM 230
K+ DKQ +LD D +WL+ + A KEE+E ++++L+ + +PI K+
Sbjct: 590 KVDPEDKQAVLDAVEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKL 640
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 79.0 bits (186), Expect = 7e-16
Identities = 39/83 (46%), Positives = 56/83 (67%)
Frame = -1
Query: 638 EVTXDIDANGILNVSAIEKSTNKENQITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKE 459
EV+ D+DA+GI+NVSA +K+TNK++ IT+ G L+ EIE MV +AEKYR D +KE
Sbjct: 516 EVSFDVDADGIINVSARDKATNKDSSITVAGSSG-LTDSEIEAMVADAEKYRASDMARKE 574
Query: 458 TIQAKNALESYCFSMKSTMEDEK 390
I+ N ES C ++S ++ K
Sbjct: 575 AIENGNRAESVCTDIESNLDIHK 597
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 75.4 bits (177), Expect = 9e-15
Identities = 33/87 (37%), Positives = 57/87 (65%)
Frame = -1
Query: 638 EVTXDIDANGILNVSAIEKSTNKENQITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKE 459
E T ++DANGIL V+A+EK+T + I ITN G LS +I+ M+ A+K++ +D +
Sbjct: 478 EATFELDANGILKVTAVEKTTGRSAHIEITNSVGHLSSTKIQEMIENADKFKQQDKDFAK 537
Query: 458 TIQAKNALESYCFSMKSTMEDEKLQGK 378
++AK+ LESY ++++T+ + + K
Sbjct: 538 KLEAKSQLESYISNIETTISEPNVMMK 564
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 33.1 bits (72), Expect = 0.048
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -1
Query: 584 KSTNKENQITITNDKGRLSKEEIERMVNEAEKYRNEDDKQ-KETIQAKNALESYCFSMKS 408
K K ++++ + RL E +E+ EAE DK ET+ KNALE Y + ++
Sbjct: 534 KKLVKVADLSVSVQEDRLPTEVLEKY-REAEHQMIATDKLVAETVDRKNALEEYIYDTRA 592
Query: 407 TMED 396
++D
Sbjct: 593 KLDD 596
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 31.5 bits (68), Expect = 0.15
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -1
Query: 620 DANGILNVSAIEKSTNKENQITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKE--TIQA 447
D LNVS + S +E +T ++ R+ +EE +RM ++ E K+K T+Q
Sbjct: 58 DLENTLNVSGTKDSNAEEQPAKLTKEEKRVEREEAKRMASKVLIKTIERTKRKRVTTVQG 117
Query: 446 KNA 438
+A
Sbjct: 118 LDA 120
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 30.7 bits (66), Expect = 0.25
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = -2
Query: 388 SKEKISDSDKQTILD-KCNDTIKWLDSNQLADKEEYEHKQKEL-EGIYNPIITKMXPG-- 221
++EKI +++TI D K + + ++ EEY KQKEL E + P ++ P
Sbjct: 426 AEEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQEELEFPDEVELQPNEL 485
Query: 220 CRRSPRRYAGL 188
R ++Y GL
Sbjct: 486 ARERFKKYRGL 496
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 29.1 bits (62), Expect = 0.78
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 542 KGRLSKEEIERMVNEAEKYRNEDD 471
KG LSKEE+ER V +A K N D
Sbjct: 525 KGTLSKEELERRVYDAAKLANAYD 548
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 28.7 bits (61), Expect = 1.0
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = -1
Query: 569 ENQITITNDKGRLSKEEIERM-VNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDE 393
++Q+TIT++ S E++E++ N AEK + E + K + ++ LES S + + E
Sbjct: 288 KSQMTITDE----SSEDLEKLHSNFAEKVKEEQELYKSLEKKRSDLESLLKSRRELL--E 341
Query: 392 KLQG 381
KL G
Sbjct: 342 KLTG 345
>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 605 LNVSAIEKSTNKENQITITNDKGRLSKEEIERMVNEAEKYRNED 474
L VS ++S K + + K EE+E VNE E++R D
Sbjct: 257 LCVSPEKRSLAKTREAVLAVTKWTTDDEELESFVNEEEEFRASD 300
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 251 QSDNYEDVXRVPEESPEVCRASRAEHPEPEVP 156
Q+D E + ++ ++ P RASRA EP+ P
Sbjct: 226 QNDTKEWLDKLGDKGPAAARASRAAAEEPQAP 257
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/49 (22%), Positives = 27/49 (55%)
Frame = -2
Query: 397 MRSSKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIY 251
+ SS E+ SDSD++ D +++ + + ++ + ++ E +G+Y
Sbjct: 1818 LSSSSEESSDSDREEPPDLYRNSVLGIFQGDIVNENDENYEDSEDDGVY 1866
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = -1
Query: 569 ENQITITNDKGRLSKEEIERMVNEAEKYRNED---DKQKETIQAK-NALESYCFSMKSTM 402
E QIT ++ + K EIER+ E E+ +E +KQKE ++ + L + C +
Sbjct: 145 ERQITDLLEEQQQLKLEIERLEAETERANSETEQYEKQKEALEEEYEELRNECLKHDPQL 204
Query: 401 EDE 393
+ E
Sbjct: 205 DAE 207
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 509 MVNEAEKYRNEDDKQKETIQAKNALESYCFSMKST 405
M+++ RN+ +KQ TI KNA++ Y S+K T
Sbjct: 247 MLSKLVSSRNKPNKQ--TILTKNAIQDYLVSLKIT 279
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -1
Query: 575 NKENQITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCF 420
NK+ + T D SKEE+E +V E E D +Q + K+ L++ F
Sbjct: 529 NKKGKHTQIEDPTAASKEELENLVREDE----NDSEQLDHFDMKSILKAEKF 576
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = -1
Query: 599 VSAIEKSTNKENQITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNA 438
V A+ KS +++ ++ G + EEI ++++ E E+D++ E N+
Sbjct: 597 VPALFKSIDQDESDILSERIGAPTAEEISQLLDSVETNEEENDEELEKAMGVNS 650
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.6 bits (56), Expect = 4.1
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 7/145 (4%)
Frame = -1
Query: 527 KEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLQGKDL*L*QADHP 348
+E E AE+ N + ++E Q K A+E + + E E+ + + + +
Sbjct: 791 REAEEEAARAAEEEANRELHEQEEAQ-KRAIEERTRAAREAKEREQREMAE----KLERQ 845
Query: 347 RQVQ--RHHQVA---GFQPAGRQGGV*AQAERIGRHLQSDNYEDVXRVPEESPEVCRA-- 189
R++Q R +++ + A R+ + A + G + V +SP R
Sbjct: 846 RRIQQERDEEISRKLAEKAAARRANIGASSPSPGAWRRGG--ASAGGVSRDSPRYSRGGY 903
Query: 188 SRAEHPEPEVPPPGLEALAPPSRRS 114
SR P E P A PPSRR+
Sbjct: 904 SRGSVPPRETLAPSKGAYVPPSRRN 928
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -1
Query: 542 KGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMK--STMEDEKLQGKD 375
+GR + + N+ E + DDKQ + KN+LE+ M+ S +E + G D
Sbjct: 1259 RGRQKTSIVAKYRNKRELPEDSDDKQDTASKDKNSLETIDEKMEDASKIEGDAKTGDD 1316
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = -3
Query: 612 RYPQRFRYREVHQQGEPDHHYQRQRSS-LQGRDRAY 508
R P R +YRE H + H R QGR +Y
Sbjct: 320 RDPDRTKYREYHSERRKQHRTDRYSDDYYQGRSYSY 355
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 5.5
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = -1
Query: 254 LQSDNYEDVXRVPEESPEVCRASRAEHPEPEVPPPGLEALAPPSRRSIKPTFHTTLKPTC 75
L D+ D R+P P H +P +L+PPS R++KP H+ P+
Sbjct: 146 LPKDSNTDPLRLP---PIATEHDPFAHLRSSMPLVMANSLSPPSSRALKP-IHSLSNPST 201
Query: 74 NNHLVTS 54
+ L S
Sbjct: 202 ASSLEPS 208
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 215 EESPEVCRASRAEHPEPE 162
EE+P AS EHPEP+
Sbjct: 244 EEAPAAAAASENEHPEPK 261
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -1
Query: 530 SKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKS 408
S+ E +++ E ++ ED+KQ E + K AL+ +C +++
Sbjct: 299 SETEQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFCSLLRN 339
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -1
Query: 542 KGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALE 432
+G L E E NEA++ NE+ E +N E
Sbjct: 89 EGELKLENFENQENEADEAENEETSYSEQNHTENTEE 125
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -1
Query: 581 STNKENQITITNDKGRLSKEEIERMVNEAEKYRNEDDKQK--ETIQAKNALESYCF 420
+TNK N + N L EEI V + E + DD+ + E +A ++ E Y F
Sbjct: 46 NTNKHNVYSTKNSMYLLGFEEILNTVLDCEPHIFTDDELRVIENFKALDSDERYLF 101
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 391 SSKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYE 281
SS KIS+SD ++ D D+ L S + D ++ E
Sbjct: 540 SSNMKISESDDESNGDMIRDSFDRLSSESIKDSQKTE 576
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.4 bits (53), Expect = 9.6
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -2
Query: 538 VVSPRK-RSSVWLMRQRSTETRMTSKRRPSRPRMHWNLTASA*SLPWRMRSSKEKISDSD 362
V+SP+ R S +R S + + S R SR R + N+++++ + + SSK S
Sbjct: 535 VISPQPTRRSRTPIRSLSGRSSVASSRNSSRTRSYSNVSSASSNSLISIISSKPSSSTVQ 594
Query: 361 KQT 353
+QT
Sbjct: 595 RQT 597
>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 315
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -2
Query: 400 RMRSSKEKISDSDKQTILDKCNDTIKWLDS--NQLADKEEYEHKQKELEGIYNPIITKMX 227
RM+ + E + + + + K N + + +++ +E+E K+K + YN ++ KM
Sbjct: 137 RMKITDEYLQGASIEVLARKFNTSPQRIEALIKLRRINDEFEEKKKPILHSYNEVMEKML 196
Query: 226 PGCRR 212
C +
Sbjct: 197 NACTK 201
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 9.6
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = -1
Query: 299 RQGGV*AQAERIGRHLQSD-NYEDVXRVPEESPEVCRASRAEH-PEPEVPPPGLEALAPP 126
R+G + +R R +S NY D ++ + ++ P P++PPP E P
Sbjct: 239 RKGRILTSEQRAERERESQSNYADHDLWADDDQATVNQRKLDYAPAPKLPPPSHEESYNP 298
Query: 125 SRRSIK 108
+K
Sbjct: 299 PEEYLK 304
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,089
Number of Sequences: 5004
Number of extensions: 46554
Number of successful extensions: 243
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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