Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_B19
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...   164   1e-41
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     31   0.19 
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    28   1.3  
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    28   1.8  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    27   2.3  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    27   3.1  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   7.2  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   7.2  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    25   9.5  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
            Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score =  164 bits (399), Expect = 1e-41
 Identities = 91/172 (52%), Positives = 112/172 (65%)
 Frame = -3

Query: 626  GAGTNNXXXXXXXXXXXLYPRASPPVHLFMVRLAPGGCVTPGKGTVTLCPAHADRRLLNQ 447
            GAGT+N            Y        LFMVR+A G  +  GKGT+TL P H +R++L Q
Sbjct: 714  GAGTSNARLAQLLRQLASYYHKESNA-LFMVRIAQG-LLYLGKGTMTLNPYHTERQILGQ 771

Query: 446  PALAGLLVVLTAFLDCKTIILGKSHYLLYVLATAMQPRWLVTLDENLQPLNVSVRVGQAV 267
             A AGL+ V+ A LD  T +L  SH+LLY +  A++PR L+TL E+ Q L VSVRVGQAV
Sbjct: 772  TAFAGLMTVVLAMLDANTFVLDTSHWLLYAITLAIRPRMLITLGEDGQYLPVSVRVGQAV 831

Query: 266  DVIGKAGTPKTIAGSHTHTTPVLLSFGERAELATDEYIPLSPIMEGFVILKK 111
            DV+G+AG PK I G  THTTPVLL   ERAELAT+ Y PL+  +EG VILKK
Sbjct: 832  DVVGQAGRPKVITGWVTHTTPVLLHHNERAELATEAYTPLTS-LEGIVILKK 882



 Score = 33.9 bits (74), Expect = 0.027
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -2

Query: 675 SDNDVAYNAIFAMGLVG 625
           +D DVAYNAIFAMGLVG
Sbjct: 698 NDLDVAYNAIFAMGLVG 714


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 374 HYLLYVLATAMQPRWLVTLDENLQPLN 294
           H++LYV +  +QP WL   D N+ P N
Sbjct: 333 HFVLYVPSPQIQPLWLENEDSNIIPTN 359


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = -2

Query: 729 PNPQXSXNXRAQ*-ITPTISDNDVA-YNAIFAMGLVGRRH*QRKTGDDAACAGAVPTGKS 556
           PNP    N  A    T T S N V     IF+   V R++   +TG  AA A    T  +
Sbjct: 184 PNPSTPSNGPAPVSTTATPSRNPVTRLQRIFSQNSVSRQN--SRTGRGAAVANTEETNST 241

Query: 555 SGAPVHGAAGA 523
            G+   GAA +
Sbjct: 242 GGSETGGAANS 252


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 21/88 (23%), Positives = 31/88 (35%)
 Frame = +1

Query: 373 WDLPRIMVLQSRKAVSTTSRPASAGWLSRRRSACAGHRVTVPLPGVTQPPGASRTMNRCT 552
           +D P   +LQ R+            +       C G+RV  P P     P A  T     
Sbjct: 131 FDTPNARILQLRQLAKLKKHGPRISYHGIGIGRCNGNRVLPPYPEPALLPEAPNTREASN 190

Query: 553 GGLARGYSASARSIVASLALLVPAPHES 636
                G+S +  +I  +L L  P+   S
Sbjct: 191 NTYLYGFSNNFINISRTLNLRYPSASAS 218


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +3

Query: 237 LRCTGFSDNIHSLSHTHADVQGLKIFVEGDQPAGLHRSRQYVQQVVGFAEDYGLAVEE 410
           +R    +DN+  L     +V+ + + + G  PAGL  + +  QQ      D  + V E
Sbjct: 69  VRLNELTDNLRKLDTIEREVEDVDVCIVGAGPAGLSAAIRIKQQAAKANRDIRVVVLE 126


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 556  GLARGYSASARSIVASLALLVPAPHE--SHGEYGVVSDVVIRNRGSYLLSPXI 708
            GL +GYS   + ++ + + L+  P E  SH   G V+  V R     +L P I
Sbjct: 1561 GLRQGYSGLKQGLLGAKSTLMGLPRETRSHKSLGGVAQTVGRKVPLIVLQPMI 1613


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -3

Query: 332 WLVTLDENLQPLNVSVRVGQAVDVIGKAGTPKTIAGSHTH 213
           W  T+  ++QP   +V + Q+++ +      K +A  H H
Sbjct: 180 WHPTISSHIQPETATVFIEQSLNFLEGPKLTKALAAQHLH 219


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 613 LVPAPHESHGEYGVVSDVVIRNRGSY 690
           L PA H +   YG + DVV+ + G Y
Sbjct: 805 LAPAIHATLDVYGELIDVVVSHNGQY 830


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 600 QSCVVSAGAPRVPWRIWRCKRRRYQK 677
           +S V+  GA  +PW +    RRR++K
Sbjct: 263 ESGVLVLGATNIPWTLDSAIRRRFEK 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,965,897
Number of Sequences: 5004
Number of extensions: 59888
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)