Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_B18
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   9.3  
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ...    25   9.3  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    25   9.3  

>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 199 SKLIPIINGSKSNSKIKEFPVINACLNGNKNL-LTEPSYNYMRSKNDFSN 345
           S ++P +  + SN++   +P  +  +NGN ++ +  P+Y    S + FSN
Sbjct: 74  STVMPALETNASNAQY--YPAYSV-INGNNSVQVASPAYTVSHSPHSFSN 120


>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 177 NIEVVISFKTYTNHKWF 227
           NI+++IS+  YTN  WF
Sbjct: 46  NIQMLISWLQYTNPNWF 62


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 18/75 (24%), Positives = 33/75 (44%)
 Frame = +1

Query: 247 KEFPVINACLNGNKNLLTEPSYNYMRSKNDFSNSNVKFNRYRWF*CSVHHGETCPRHGHF 426
           K  P+     NG  N+L  PSY    S +  ++S+  +        + +H + C  + H+
Sbjct: 59  KSAPLHCPSTNGKTNVL--PSYASTPSLSPMTSSHFPYASDGTLISATNHCDDCSYNPHY 116

Query: 427 VTLYSQPSISCHFTS 471
           + + S  S   H +S
Sbjct: 117 LPVNSNGSSPSHTSS 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,649
Number of Sequences: 5004
Number of extensions: 62166
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)