Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_B18
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    31   0.71 
AF099917-3|AAC68781.1|  310|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p...    28   8.7  
L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore co...    28   8.7  
AL110479-28|CAJ76967.1|  213|Caenorhabditis elegans Hypothetical...    28   8.7  
AL110479-27|CAB60322.2|  333|Caenorhabditis elegans Hypothetical...    28   8.7  

>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 220 NGSKSNSKIKEFPVINACLNGNKNLLTEPSYNYMRSKNDFSNSNVKFN 363
           N S + S I+   + ++ +N N N L+  S++   S N+ SN+NV  N
Sbjct: 112 NSSSAASSIQNIGLNSSLINSNTNNLSSSSHSMSGSNNNNSNNNVVNN 159


>AF099917-3|AAC68781.1|  310|Caenorhabditis elegans Hypothetical
           protein F54D10.3 protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 289 NLLTEPSYNYMRSKNDFSNSNVKFNRYRW 375
           NL+ +   N +  K D  NSN K +R RW
Sbjct: 22  NLIKKVFLNILEPKEDLWNSNQKIDRERW 50


>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 226  SKSNSKIKEFPVINACLNGNKNLLTEPSYNYMRSKNDFSNSNVKFNRYRW 375
            S+ NS +++  ++     G      +P + Y R KNDF N N +  R R+
Sbjct: 3574 SRRNS-MEDVEILMTAQRGLGRGYLKPDHIYSRLKNDFQNMNDQSQRMRY 3622


>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 226  SKSNSKIKEFPVINACLNGNKNLLTEPSYNYMRSKNDFSNSNVKFNRYRW 375
            S+ NS +++  ++     G      +P + Y R KNDF N N +  R R+
Sbjct: 3574 SRRNS-MEDVEILMTAQRGLGRGYLKPDHIYSRLKNDFQNMNDQSQRMRY 3622


>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
            protein F25F2.2 protein.
          Length = 4307

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 226  SKSNSKIKEFPVINACLNGNKNLLTEPSYNYMRSKNDFSNSNVKFNRYRW 375
            S+ NS +++  ++     G      +P + Y R KNDF N N +  R R+
Sbjct: 3574 SRRNS-MEDVEILMTAQRGLGRGYLKPDHIYSRLKNDFQNMNDQSQRMRY 3622


>L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore
           complex protein protein15 protein.
          Length = 1127

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 620 SLVSIAKTSTKMFSK*ILYVTPLPLCICNKVSSS 519
           +L+S+A   TK FSK + ++T    C C+ +  +
Sbjct: 862 TLMSLADAETKSFSKFVEFLTRAYYCACSSIDGT 895


>AL110479-28|CAJ76967.1|  213|Caenorhabditis elegans Hypothetical
           protein Y105C5B.6b protein.
          Length = 213

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/86 (19%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
 Frame = -3

Query: 719 DYVAILF--QNGALITYCIT*YNLFHIQYIVYLLHSLVSIAKTSTKMFSK*ILYVTPLPL 546
           +++A+LF    G L T CI  Y +    Y++++L    +  K +    S+ ++    + L
Sbjct: 70  NFIAVLFVIAGGFLATVCI--YLIIAYCYLIFMLRKSSNAIKNTQFHKSRAVIKKKEVKL 127

Query: 545 CICNKVSSSLKLNV*CMCTCIKCTLL 468
              + ++ ++++++ C+      +LL
Sbjct: 128 FFMSSITVAIQISILCLVIVYATSLL 153


>AL110479-27|CAB60322.2|  333|Caenorhabditis elegans Hypothetical
           protein Y105C5B.6a protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/86 (19%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
 Frame = -3

Query: 719 DYVAILF--QNGALITYCIT*YNLFHIQYIVYLLHSLVSIAKTSTKMFSK*ILYVTPLPL 546
           +++A+LF    G L T CI  Y +    Y++++L    +  K +    S+ ++    + L
Sbjct: 190 NFIAVLFVIAGGFLATVCI--YLIIAYCYLIFMLRKSSNAIKNTQFHKSRAVIKKKEVKL 247

Query: 545 CICNKVSSSLKLNV*CMCTCIKCTLL 468
              + ++ ++++++ C+      +LL
Sbjct: 248 FFMSSITVAIQISILCLVIVYATSLL 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,433,320
Number of Sequences: 27780
Number of extensions: 348647
Number of successful extensions: 721
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)