Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_B17
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    71   2e-13
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    66   4e-12
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    44   2e-05
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    34   0.027
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    27   4.0  

>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 50/164 (30%), Positives = 67/164 (40%)
 Frame = -2

Query: 784 KTKXNKLXGKXEXXGIPPXPXGXLKXGSPLXLXPTVSSAFPLXXSXXXXXXXXXXXXTKV 605
           +TK   L GK E  GIPP P G  +      +                          K 
Sbjct: 447 RTKDCNLLGKFELSGIPPAPRGVPQIEVTFDVDANGILNVSALEKGTGKTQKITITNDKG 506

Query: 604 VFSKEEXXXXVNEAEKYRNGDDKPKETIQAXXALEFXWXSMKFTMXDEKXKXKIFXFXXQ 425
             SKEE    V+EAEKY+  D+     IQA   LE    S++ ++ D   K K+     +
Sbjct: 507 RLSKEEIDRMVSEAEKYKAEDEAETSRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKE 566

Query: 424 TILXKXXXTXKXVDXNXXADKXXYXHKQKELXGIYNXIIXXMYQ 293
            I      T + +D N  A K  Y  KQKEL G+ N I+  +YQ
Sbjct: 567 AIDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIYQ 610



 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 24/44 (54%), Positives = 27/44 (61%)
 Frame = -1

Query: 737 PTGAXWXPQXXVTFXIXANGILSVSAXXKSTXKGXKXTITHDKG 606
           P      PQ  VTF + ANGIL+VSA  K T K  K TIT+DKG
Sbjct: 463 PPAPRGVPQIEVTFDVDANGILNVSALEKGTGKTQKITITNDKG 506


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 66.5 bits (155), Expect = 4e-12
 Identities = 48/164 (29%), Positives = 66/164 (40%)
 Frame = -2

Query: 784 KTKXNKLXGKXEXXGIPPXPXGXLKXGSPLXLXPTVSSAFPLXXSXXXXXXXXXXXXTKV 605
           +TK   L GK E  GIPP P G  +      +                          K 
Sbjct: 447 RTKDCNLLGKFELSGIPPAPRGVPQIEVTFDVDANGILNVSALEKGTGKTQKITITNDKG 506

Query: 604 VFSKEEXXXXVNEAEKYRNGDDKPKETIQAXXALEFXWXSMKFTMXDEKXKXKIFXFXXQ 425
             SKEE    V EAEKY+  D+     IQA   LE    S++ ++ D   K K+     +
Sbjct: 507 RLSKEEIDRMVAEAEKYKAEDEAESGRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKE 566

Query: 424 TILXKXXXTXKXVDXNXXADKXXYXHKQKELXGIYNXIIXXMYQ 293
           T+      T + +D N  A K  +  KQKEL  + N I+  +YQ
Sbjct: 567 TVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKIYQ 610



 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 24/44 (54%), Positives = 27/44 (61%)
 Frame = -1

Query: 737 PTGAXWXPQXXVTFXIXANGILSVSAXXKSTXKGXKXTITHDKG 606
           P      PQ  VTF + ANGIL+VSA  K T K  K TIT+DKG
Sbjct: 463 PPAPRGVPQIEVTFDVDANGILNVSALEKGTGKTQKITITNDKG 506


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 3/165 (1%)
 Frame = -2

Query: 781 TKXNKLXGKXEXXGIPPXPXGXLKXGSPLXLXPT-VSSAFPLXXSXXXXXXXXXXXXTKV 605
           TK N L GK +  GIPP P G  +      +    V +   +  S             K 
Sbjct: 477 TKDNNLLGKFDLRGIPPAPRGVPQIEVTFEVDANGVLTVSAVDKSGKGKPEKLVIKNDKG 536

Query: 604 VFSKEEXXXXVNEAEKYRNGDDKPKETIQAXXALEFXWXSMKFTM-XDEKXKXKIFXFXX 428
             S+E+    V EAE++   D   KE I+A   LE    S+K     DE+   K+     
Sbjct: 537 RLSEEDIERMVKEAEEFAEEDKILKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDK 596

Query: 427 QTILXKXXXTXKXVDXN-XXADKXXYXHKQKELXGIYNXIIXXMY 296
           Q +L       + ++ +   A K  +  ++++L  + + I   +Y
Sbjct: 597 QAVLDAVEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLY 641



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 737 PTGAXWXPQXXVTFXIXANGILSVSAXXKS-TXKGXKXTITHDKG 606
           P      PQ  VTF + ANG+L+VSA  KS   K  K  I +DKG
Sbjct: 492 PPAPRGVPQIEVTFEVDANGVLTVSAVDKSGKGKPEKLVIKNDKG 536


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 33.9 bits (74), Expect = 0.027
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -1

Query: 716 PQXXVTFXIXANGILSVSAXXKSTXKGXKXTITHDKG 606
           PQ  V+F + A+GI++VSA  K+T K    T+    G
Sbjct: 513 PQIEVSFDVDADGIINVSARDKATNKDSSITVAGSSG 549


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 491 PXKFQCXLGLNGLLWLVIPVSVLLCLINXTXXLF 592
           P  F   +GL  + W +    VLLC +  T   F
Sbjct: 182 PNDFNYAIGLYLICWFIFTFLVLLCTVRSTLAFF 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,427,769
Number of Sequences: 5004
Number of extensions: 14990
Number of successful extensions: 28
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)