Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_B16
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 31 0.19
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 28 1.8
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|... 27 2.3
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 27 3.1
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 27 4.0
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe... 27 4.0
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 26 5.4
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote... 25 9.4
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 25 9.4
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.4
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 31.1 bits (67), Expect = 0.19
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Frame = -1
Query: 482 WNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRC 303
W++ + A NC A NRVG +E + F+G S GP G
Sbjct: 184 WDLVTKARAFENCIPLVAANRVGTDEKLS----------------FFGHSKIIGPTGKVI 227
Query: 302 PGLSRTRDGLLIAAVDLNLNRQIKDRRCYYMTQRL-DMYVNSLS 174
L ++G++ VDL+ + ++ + R+ D+Y LS
Sbjct: 228 KALDEEKEGVISYTVDLDDAKPLRKNYYTFFEDRMPDLYKRLLS 271
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 27.9 bits (59), Expect = 1.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +3
Query: 585 SEADVHRESCRIWSQIQDGRCYLPCSSWI 671
S H +SC++ Q +DG C++ +I
Sbjct: 434 SSLSCHSDSCKVSCQNEDGTCFISAKDYI 462
>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 243
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 448 FVIAAFLASTFHMYSLPPSPAIVAD 522
F+ AA + + H+ S+PPSP +++D
Sbjct: 156 FIDAANSSDSCHLVSIPPSPQLLSD 180
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 184 TVSAKYSSWITSRRSYTKMKSNFKRSRSNIDHRNLCILRRIS 59
T S+ YSS + RSY++ ++ +SRS R++ + I+
Sbjct: 629 TYSSSYSSTYSRGRSYSRSTRSYSKSRSYSRSRSVTPINNIN 670
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -3
Query: 246 EQTDQRQTLLLHDPTPGHVREQSQQSTRAGLQAAGRTRK*KAILSDPVPTLTTE 85
+Q + ++ + + PT E++ Q+ RA L A+ K + P PT TE
Sbjct: 552 KQAKEMESKMSNSPTQKSKTEENNQAVRAILDASATMEKQYDLHRLPTPTSQTE 605
>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 325
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = -1
Query: 683 AILTNPTTTWKVT---PAILYLRPDTTRFAVNICFGRHHVLNWMMFGQNGAEIVFNPSAT 513
A NP+ T P +Y R +A + G H++ +FG +G+E+ F T
Sbjct: 44 AAAINPSDLMNATGGFPYTVYPRIVGRDYAGTVISGASHLVGTRVFGTSGSELSFTKDGT 103
Query: 512 IA 507
A
Sbjct: 104 HA 105
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 195 HVREQSQQSTRAGLQAAGRTRK*KAILSDPVPTLTTEIY 79
H R S+Q R+GL + TR + LSD + T+ Y
Sbjct: 96 HSRSASRQRRRSGLSRSNATRYSRRSLSDWLETIRENNY 134
>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +1
Query: 499 PSPAIVADGLKTISAPFCPNIIQFKTWCRPKQMFTANLVVSGRKYRMAGVTFHVVV 666
P P A L I+ FC ++ F +W QMFT + + R G +F VV
Sbjct: 58 PRPKHNATFLLAITTGFCGSLTTFSSWM--LQMFTGMANLDPFERRGRGYSFLSVV 111
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 955
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 102 ERDRLKLLFIFVYDLRLVIQLEYFAE 179
E + +K F F +DL+ +++L+ +AE
Sbjct: 325 ELEAIKFTFAFWWDLKQMVELDVYAE 350
>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +1
Query: 499 PSPAIVADGLKTISAPFCPNIIQFKTWCRPKQMFTANLVVSGRKYRMAGVTFHVVV 666
P P A L I+ FC ++ F +W QMFT + + R G +F VV
Sbjct: 58 PRPKHNATFLLAITTGFCGSLTTFSSWM--LQMFTGMANLDPFERRGRGYSFLSVV 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,804
Number of Sequences: 5004
Number of extensions: 55726
Number of successful extensions: 154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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