Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_B16
(788 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical p... 205 3e-53
Z48006-5|CAA88049.1| 251|Caenorhabditis elegans Hypothetical pr... 29 5.0
AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical ... 29 5.0
AF040660-7|AAN65287.1| 366|Caenorhabditis elegans Hypothetical ... 29 5.0
AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical ... 29 5.0
AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical ... 29 5.0
AY204196-1|AAO39199.1| 412|Caenorhabditis elegans nuclear recep... 28 6.6
AC006777-2|AAK72308.3| 326|Caenorhabditis elegans Nuclear hormo... 28 6.6
AC006777-1|ABB51174.1| 424|Caenorhabditis elegans Nuclear hormo... 28 6.6
>U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical
protein F13H8.7 protein.
Length = 387
Score = 205 bits (500), Expect = 3e-53
Identities = 95/160 (59%), Positives = 113/160 (70%)
Frame = -1
Query: 611 RFAVNICFGRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAITNCYFTA 432
R +NIC+GRHH NWMM+ NGAEI+FNPSAT+ SE +W +EARNAAI N FT
Sbjct: 229 RIGINICYGRHHPQNWMMYALNGAEIIFNPSATVGAL--SEPLWGIEARNAAIANHVFTV 286
Query: 431 AINRVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDL 252
INRVG E FPNEFTS +G+PAHKD G FYGSSY PDG R P LSR R+G+LIA +DL
Sbjct: 287 GINRVGTEVFPNEFTSGNGQPAHKDFGHFYGSSYIAAPDGSRTPALSRVREGVLIAELDL 346
Query: 251 NLNRQIKDRRCYYMTQRLDMYVNSLSKVLELDYKPQVVHE 132
NL RQ KD + MT RLDMY +++V DY+P + E
Sbjct: 347 NLCRQCKDAWGFRMTNRLDMYAQKITEVSNPDYRPDIRRE 386
Score = 74.5 bits (175), Expect = 8e-14
Identities = 31/42 (73%), Positives = 34/42 (80%)
Frame = -3
Query: 732 TGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYDKI 607
TG VIG+ RKNHIPRVGDFNES YYME GHPVF T+Y +I
Sbjct: 189 TGRVIGRSRKNHIPRVGDFNESTYYMESTLGHPVFETKYGRI 230
>Z48006-5|CAA88049.1| 251|Caenorhabditis elegans Hypothetical
protein F19C6.5 protein.
Length = 251
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/63 (23%), Positives = 32/63 (50%)
Frame = +1
Query: 559 IIQFKTWCRPKQMFTANLVVSGRKYRMAGVTFHVVVGFVKIADSRNVVLAMFPDHVXGVL 738
+ F+TW R + ++ S R M G +H + FV ++ ++++ + D++ +
Sbjct: 157 LCHFRTWQRERSYHSSLYTGSKRNQLMHGFVYHFIAYFVLVS---SLLIIVNKDYLIADV 213
Query: 739 ITT 747
ITT
Sbjct: 214 ITT 216
>AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical
protein W05G11.6d protein.
Length = 594
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = -1
Query: 566 WMMFGQNGAEIVFNPSATIAGEG-GSEYMWNVEARNAAITNCYFTAAINRVGYEEF 402
WM FG +G NP A G G+ + N A + N FT E F
Sbjct: 332 WMKFGADGRLYAINPEAGFFGVAPGTSHKTNAMAMESCRANTIFTNVAETADGEYF 387
>AF040660-7|AAN65287.1| 366|Caenorhabditis elegans Hypothetical
protein W05G11.6c protein.
Length = 366
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = -1
Query: 566 WMMFGQNGAEIVFNPSATIAGEG-GSEYMWNVEARNAAITNCYFTAAINRVGYEEF 402
WM FG +G NP A G G+ + N A + N FT E F
Sbjct: 47 WMKFGADGRLYAINPEAGFFGVAPGTSHKTNAMAMESCRANTIFTNVAETADGEYF 102
>AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical
protein W05G11.6b protein.
Length = 541
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = -1
Query: 566 WMMFGQNGAEIVFNPSATIAGEG-GSEYMWNVEARNAAITNCYFTAAINRVGYEEF 402
WM FG +G NP A G G+ + N A + N FT E F
Sbjct: 222 WMKFGADGRLYAINPEAGFFGVAPGTSHKTNAMAMESCRANTIFTNVAETADGEYF 277
>AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical
protein W05G11.6a protein.
Length = 651
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = -1
Query: 566 WMMFGQNGAEIVFNPSATIAGEG-GSEYMWNVEARNAAITNCYFTAAINRVGYEEF 402
WM FG +G NP A G G+ + N A + N FT E F
Sbjct: 332 WMKFGADGRLYAINPEAGFFGVAPGTSHKTNAMAMESCRANTIFTNVAETADGEYF 387
>AY204196-1|AAO39199.1| 412|Caenorhabditis elegans nuclear receptor
NHR-110 protein.
Length = 412
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 559 IIQFKTWCRPKQMFTANLVVSGRKYRMAGV 648
+++ K R K+MF NL + KY++AGV
Sbjct: 365 LLRIKQLMRVKEMFLRNLNIRMEKYKIAGV 394
>AC006777-2|AAK72308.3| 326|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 110, isoform a protein.
Length = 326
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 559 IIQFKTWCRPKQMFTANLVVSGRKYRMAGV 648
+++ K R K+MF NL + KY++AGV
Sbjct: 279 LLRIKQLMRVKEMFLRNLNIRMEKYKIAGV 308
>AC006777-1|ABB51174.1| 424|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 110, isoform b protein.
Length = 424
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 559 IIQFKTWCRPKQMFTANLVVSGRKYRMAGV 648
+++ K R K+MF NL + KY++AGV
Sbjct: 377 LLRIKQLMRVKEMFLRNLNIRMEKYKIAGV 406
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,114,663
Number of Sequences: 27780
Number of extensions: 330433
Number of successful extensions: 977
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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