Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_B14
(820 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 34 0.021
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 30 0.45
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 30 0.45
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 29 0.60
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 0.79
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 29 0.79
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 28 1.4
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 1.8
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 27 3.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 4.2
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.2
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 5.6
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 7.4
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 25 9.8
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 9.8
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 34.3 bits (75), Expect = 0.021
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -2
Query: 186 DEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 34
DE + ++SS EDND+ S SES +S ++SD S S +E
Sbjct: 110 DESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSE 160
Score = 32.3 bits (70), Expect = 0.085
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -2
Query: 159 NDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 34
++SS EDND+ S SES +S ++SD S S +E
Sbjct: 173 SESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSE 214
Score = 31.9 bits (69), Expect = 0.11
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 159 NDSSDEDNDADMEPSQSESGASWDESD-EQLSDDGDVEISDAE 34
++SS EDND+ S SES +S ++SD S D + E S +
Sbjct: 227 SESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKD 269
Score = 29.5 bits (63), Expect = 0.60
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -2
Query: 195 EKQDEQTAVLDY-NDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 34
E D ++ D ++SS ED+D+ S SES +S + SD S S +E
Sbjct: 124 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSE 178
Score = 29.5 bits (63), Expect = 0.60
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -2
Query: 195 EKQDEQTAVLDY-NDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 34
E D ++ D ++SS ED+D+ S SES +S + SD S S +E
Sbjct: 178 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSE 232
Score = 29.5 bits (63), Expect = 0.60
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = -2
Query: 195 EKQDEQTAVLDY-NDSSDEDNDADMEPSQSESGASWDESDEQLS-----DDGDVEISDAE 34
E D ++ D ++SS ED+D+ S SES +S +SD + DD + SD+E
Sbjct: 232 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSE 291
Score = 29.1 bits (62), Expect = 0.79
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 159 NDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 34
++SSD ++D+ + S SES +S ++SD S S +E
Sbjct: 274 SNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSE 315
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 29.9 bits (64), Expect = 0.45
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 186 DEQTAVLDYN-DSSDEDNDADMEPSQSESGASWDESDEQ 73
+E+ +Y+ D+S+ED ++ E ESG WDE + +
Sbjct: 960 EEEEESEEYSEDASEEDGYSESEVEDEESGEDWDELERK 998
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 29.9 bits (64), Expect = 0.45
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 189 QDEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSD--DGDVEISDAE 34
+ +QT + D DE+ D +ME + SE ES+ +++ D + E SD E
Sbjct: 450 ETQQTLLTSALDDEDEEGDEEMEEALSEDEDFQAESESDVAEEYDENAESSDEE 503
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 29.5 bits (63), Expect = 0.60
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -2
Query: 162 YNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEIS 43
++D +D+D+D E S S + DESDE SD+G +S
Sbjct: 604 HSDLNDDDDDYQDEESYSYASDDDDESDED-SDEGPTLLS 642
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.1 bits (62), Expect = 0.79
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 144 EDNDADMEPSQSESGASWDESDEQLSDDGDVEISD 40
EDN EP ESG +DE +E+ +D D + D
Sbjct: 495 EDNSNFHEPELYESGLEYDEDEEEDEEDVDEDELD 529
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 29.1 bits (62), Expect = 0.79
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 195 EKQDEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDG 58
E DE T+ + ND S ED+D D ++ A + SDE +G
Sbjct: 342 EGVDEGTST-EANDESSEDDDEDNNTDEANEDAQSNVSDESPKGEG 386
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 186 DEQTAVLDYNDSSDEDNDAD-MEPSQSESGASWDESDEQLSDDGDVE 49
D+ V D +E+ +AD ME E G +E +E+ DGD E
Sbjct: 165 DDAPPVQPDADEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGDGDGE 211
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 165 DYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISD 40
D++D+ DAD E + E+ +E DE+ D + E D
Sbjct: 163 DFDDAPPVQPDADEEEEEEEADEMEEEFDEEGEGDEEEEEED 204
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = -2
Query: 195 EKQDEQTAVLDYND----SSDEDNDADMEPSQSESGASWDESDEQL 70
E ++E+ AV+ + SSD +++ S+SES +S E +E++
Sbjct: 145 ESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEEEV 190
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 156 DSSDEDNDADMEPSQSESGASWDESDEQ 73
++SDED D+E + E +E DE+
Sbjct: 204 EASDEDESVDLEEDEEEEDEEDEEGDEE 231
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 165 DYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDG 58
D+ D +E+N D E Q + + E DE++++DG
Sbjct: 4130 DFEDPLEENNTLD-EDIQQDDFSDLAEDDEKMNEDG 4164
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 153 SSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDA 37
SS+ D + + + + S DE DE+ D DVE+S++
Sbjct: 221 SSESDRVSQISDDEEDEEGSADEEDEE---DSDVELSES 256
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 150 SDEDNDADMEPSQSESGASWDESDEQLSDD 61
S E+ +D ESG+S DESD +D
Sbjct: 534 SKEEGRSDESSESEESGSSSDESDNSEKED 563
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -2
Query: 165 DYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 34
D + +E ++ + + S D+ E L DDGD+E S+ +
Sbjct: 135 DLSLDEEESESSEKSKKKKKKSKSKDDGSEAL-DDGDIESSEKD 177
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 165 DYNDSSDEDNDADMEPSQSESGASWDES 82
D + SSD D+D +PS+SE +S S
Sbjct: 276 DLSLSSDSDDDEKKQPSKSEKTSSMSVS 303
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 150 SDEDNDADMEPSQSESGASWDESDEQLSDDGDVE 49
SDE ++ D P QS + S + +D+ L + D+E
Sbjct: 40 SDEIDEHDSIPEQSNTEKSIEINDKNLEAEKDIE 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,089,609
Number of Sequences: 5004
Number of extensions: 10818
Number of successful extensions: 118
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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