Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_B12
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    30   0.32 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.3  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    26   5.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.3  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    26   7.0  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.0  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    25   9.2  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = -2

Query: 606 TSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLAST-TTA*PGETEKTTPATMSAG 430
           TSS ++S A SNS +++   SSS N T   +    +++ST +++ P  +  +T A  SA 
Sbjct: 209 TSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSAS 268

Query: 429 DSS 421
            +S
Sbjct: 269 ATS 271



 Score = 29.1 bits (62), Expect = 0.75
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -3

Query: 260 GGRPTAVPHREPGVPAGTE 204
           GG PTA P  EP V  GTE
Sbjct: 835 GGNPTAAPTNEPTVTTGTE 853



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 24/69 (34%), Positives = 35/69 (50%)
 Frame = -2

Query: 606 TSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETEKTTPATMSAGD 427
           TSS ++S A SNS +++   SSS N T        T A+ T++    T  +  AT S+  
Sbjct: 177 TSSSLSSTAASNSATSSSLASSSLNST--------TSATATSSSLSSTAASNSATSSSLA 228

Query: 426 SSLFGKTTT 400
           SS    TT+
Sbjct: 229 SSSLNSTTS 237


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 21/64 (32%), Positives = 38/64 (59%)
 Frame = -2

Query: 612 PRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETEKTTPATMSA 433
           P TSS  +S ++S+S S++   SSS++     S+++ T++S+T      T   TP++ S+
Sbjct: 209 PITSSTSSSHSSSSSSSSS---SSSSSRPSSSSSFITTMSSSTFI---STVTVTPSSSSS 262

Query: 432 GDSS 421
             SS
Sbjct: 263 STSS 266


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 346 NVDSYGDRKTWGSNGSS 296
           N  SYG   T+GSNGSS
Sbjct: 72  NYGSYGASNTYGSNGSS 88


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +1

Query: 157 PPHKAVPXMSPRSRPASVPAGTPGSR*GTAVGLPPLP 267
           PP    P + P S P S+P   P S    A   PPLP
Sbjct: 415 PPVPTPPSLPP-SAPPSLPPSAPPSLPMGAPAAPPLP 450


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +1

Query: 139 GDCPVAPPHKAVPXMSPRSRPASVPAGTPGSR*GTAVGLPPLPGIKTR 282
           G  P  P   A   +  + RP  +P   P +    A  +P +PG+  R
Sbjct: 524 GPAPGYPGMNARGPVPAQGRPMMMPGSVPSAGPAEAEAVPAVPGMPER 571


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/61 (26%), Positives = 36/61 (59%)
 Frame = -2

Query: 615 PPRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETEKTTPATMS 436
           P  +SSK +S + S+S S++   SSS++ +   S+   + +S ++A P  ++ ++  + S
Sbjct: 165 PSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSS 224

Query: 435 A 433
           +
Sbjct: 225 S 225


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 147 SRCSPTQGGPRYESTFASSFSP 212
           S+ S TQ  PR  ST A SF P
Sbjct: 135 SKYSITQDSPRVSSTIAYSFKP 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,298
Number of Sequences: 5004
Number of extensions: 54453
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)