Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_B12
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.79 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.79 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   1.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   1.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +1

Query: 181  MSPRSRPASVPAGTPGSR*GTAVGLPPLPGIKTRCVSSHWNRSIPRSSCRRNYP 342
            +SP S   S+P     SR      LPP+   +T  V  +    +P +  R + P
Sbjct: 1829 ISPMSEQKSLPRRGRSSRSSLRTLLPPISVAETTFVGGNQGNVVPGNGDRSDRP 1882


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +1

Query: 181  MSPRSRPASVPAGTPGSR*GTAVGLPPLPGIKTRCVSSHWNRSIPRSSCRRNYP 342
            +SP S   S+P     SR      LPP+   +T  V  +    +P +  R + P
Sbjct: 1825 ISPMSEQKSLPRRGRSSRSSLRTLLPPISVAETTFVGGNQGNVVPGNGDRSDRP 1878


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 663 LRDEPRDDVATDVGALVVDETAHSLHRVDVXAARN 767
           +RD     +  ++G  VV + +H+L+++D    RN
Sbjct: 126 VRDHNISALCKELGISVVQKVSHTLYKLDEIIERN 160


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 366 ISYSVFSILNITLLFSQREMSRQLTWWL 449
           ++ SVF+++   LL   +EMS ++ +W+
Sbjct: 323 LALSVFALILTALLRKMQEMSIEVPYWI 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,363
Number of Sequences: 438
Number of extensions: 4147
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)