Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_B11
(782 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M28528-1|AAA28076.1| 288|Caenorhabditis elegans protein ( C.ele... 35 0.057
AF000264-1|AAC71123.1| 657|Caenorhabditis elegans Heat shock pr... 35 0.057
U56965-1|AAB52671.1| 661|Caenorhabditis elegans Heat shock prot... 33 0.23
M26604-1|AAA28074.1| 661|Caenorhabditis elegans protein ( C. el... 33 0.23
U64599-4|AAB04562.1| 429|Caenorhabditis elegans Unidentified vi... 29 2.8
Z81592-9|CAB63315.1| 945|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z80223-1|CAB02319.1| 640|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81524-4|CAB04250.1| 528|Caenorhabditis elegans Hypothetical pr... 28 6.6
>M28528-1|AAA28076.1| 288|Caenorhabditis elegans protein (
C.elegans heat shockprotein 4 gene, 3' end. ).
Length = 288
Score = 35.1 bits (77), Expect = 0.057
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = -1
Query: 662 NSEEYXKQKKTLEDVVQPIIAKLY 591
++EE +QKK LE VVQPI++KLY
Sbjct: 245 STEENKEQKKELESVVQPIVSKLY 268
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 780 KTXFRIRKNLVLRLLMTXKXKMEEALDAAIKWLEDNQDA 664
KT ++ L +L K +E A++ AI+WL NQDA
Sbjct: 206 KTQIADKEKLGGKLTDEDKVSIESAVERAIEWLGSNQDA 244
>AF000264-1|AAC71123.1| 657|Caenorhabditis elegans Heat shock
protein protein 4 protein.
Length = 657
Score = 35.1 bits (77), Expect = 0.057
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = -1
Query: 662 NSEEYXKQKKTLEDVVQPIIAKLY 591
++EE +QKK LE VVQPI++KLY
Sbjct: 614 STEENKEQKKELESVVQPIVSKLY 637
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 780 KTXFRIRKNLVLRLLMTXKXKMEEALDAAIKWLEDNQDA 664
KT ++ L +L K +E A++ AI+WL NQDA
Sbjct: 575 KTQIADKEKLGGKLTDEDKVSIESAVERAIEWLGSNQDA 613
>U56965-1|AAB52671.1| 661|Caenorhabditis elegans Heat shock protein
protein 3 protein.
Length = 661
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = -1
Query: 662 NSEEYXKQKKTLEDVVQPIIAKLY 591
++EE +QKK LE VQPI++KLY
Sbjct: 617 SAEELKEQKKDLESKVQPIVSKLY 640
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 726 KXKMEEALDAAIKWLEDNQDAEF*RIXETEED 631
K +EEA++ AI WL N +A + E ++D
Sbjct: 596 KKTIEEAVEEAISWLGSNAEASAEELKEQKKD 627
>M26604-1|AAA28074.1| 661|Caenorhabditis elegans protein ( C.
elegans BiP (hsp3)gene, complete cds. ).
Length = 661
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = -1
Query: 662 NSEEYXKQKKTLEDVVQPIIAKLY 591
++EE +QKK LE VQPI++KLY
Sbjct: 617 SAEELKEQKKDLESKVQPIVSKLY 640
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 726 KXKMEEALDAAIKWLEDNQDAEF*RIXETEED 631
K +EEA++ AI WL N +A + E ++D
Sbjct: 596 KKTIEEAVEEAISWLGSNAEASAEELKEQKKD 627
>U64599-4|AAB04562.1| 429|Caenorhabditis elegans Unidentified
vitellogenin-linkedtranscript protein 5, isoform a
protein.
Length = 429
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +2
Query: 278 IQNAHFFYRTRHTFHSHVRAQRQILDQISTL*GSSHTPTHCTHTINIHTRANNTASIVR 454
+ F + + +H+HV + + + HTP H +H+ + H + SIVR
Sbjct: 225 VHTGEHFQQWQKIYHAHVNHTSRTNEHAAVFPSHHHTPEHRSHSAD-HPKIERKDSIVR 282
>Z81592-9|CAB63315.1| 945|Caenorhabditis elegans Hypothetical
protein T16G1.9 protein.
Length = 945
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 257 NCAFVNMEIDNISRFSLPVSNRLFSHTMR 171
N FVN E+ R+ LP +NR H M+
Sbjct: 492 NYLFVNFEVRTTDRYQLPYTNRELFHMMQ 520
>Z80223-1|CAB02319.1| 640|Caenorhabditis elegans Hypothetical
protein F26D10.3 protein.
Length = 640
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1
Query: 656 EEYXKQKKTLEDVVQPIIAKLY 591
EE+ Q+K LE + PII+KLY
Sbjct: 591 EEFEHQQKDLEGLANPIISKLY 612
>Z81524-4|CAB04250.1| 528|Caenorhabditis elegans Hypothetical
protein F32H5.4 protein.
Length = 528
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +2
Query: 398 CTHTINIHTRANNTASIVRGTLAAQDDRGHLCGDHVWLRFSL 523
C + + H N T + + D GH CG+ W++ S+
Sbjct: 82 CKSSFDFHNPPNCTITSKYDFYSINVDYGHFCGEGAWVKTSI 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,351,910
Number of Sequences: 27780
Number of extensions: 275770
Number of successful extensions: 657
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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