Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_B10
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   124   2e-29
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   124   2e-29
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    34   0.026
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    28   1.7  
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    27   3.0  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    25   9.2  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  124 bits (298), Expect = 2e-29
 Identities = 56/73 (76%), Positives = 65/73 (89%)
 Frame = -3

Query: 349 GGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 170
           GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKFG
Sbjct: 68  GGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFG 127

Query: 169 GPGARARYQKSYR 131
           G GARAR QKSYR
Sbjct: 128 GHGARARQQKSYR 140



 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 39/68 (57%), Positives = 52/68 (76%)
 Frame = -2

Query: 551 IQAVQVFGGKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 372
           +Q+VQ FG K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 371 DIRVTVQG 348
           DIRV V G
Sbjct: 61  DIRVRVSG 68


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  124 bits (298), Expect = 2e-29
 Identities = 56/73 (76%), Positives = 65/73 (89%)
 Frame = -3

Query: 349 GGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 170
           GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKFG
Sbjct: 68  GGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFG 127

Query: 169 GPGARARYQKSYR 131
           G GARAR QKSYR
Sbjct: 128 GHGARARQQKSYR 140



 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 39/68 (57%), Positives = 52/68 (76%)
 Frame = -2

Query: 551 IQAVQVFGGKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 372
           +Q+VQ FG K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 371 DIRVTVQG 348
           DIRV V G
Sbjct: 61  DIRVRVSG 68


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 33.9 bits (74), Expect = 0.026
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
 Frame = -3

Query: 409 LSFCSARKN-SLWLTSE*QSKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDIL 233
           L+ C+   N ++W T      GGG   Q  A+  AISK+LI      + E S K+     
Sbjct: 54  LAACNRLTNYNVWATVH----GGGPTGQSGAVHAAISKSLI------LQEPSLKQ----- 98

Query: 232 VQYDRSLLVADPRRCEPKKFGGPGARARY 146
           V  D   ++ D R+ E KK G P AR +Y
Sbjct: 99  VIKDTHCVLNDKRKVERKKTGQPKARKKY 127


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -3

Query: 358 QSKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIK 242
           +SKG  +V+QV  +R A  +  I F   Y++E  KK I+
Sbjct: 676 RSKGVSYVSQVPWLRNATIRDNILFDYPYIEERYKKVIQ 714


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 607 PTGFSLSKWLLCRRQDVSPSRPSKYSEVRKPPP 509
           P   S+S  +L +++     RPS +SE++KP P
Sbjct: 483 PPKSSISSSILTQQRQFHTFRPSFHSEIKKPLP 515


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -1

Query: 708 GNSYDH*AYLGDTIEQV--CTKKQAVPVRNSSSTVGLL--AFLCQNGCC 574
           GNS+   A+L DTI  +    + Q +P  +S+S +  L  AF     CC
Sbjct: 39  GNSFSGQAWLRDTIPSLSNVVESQTIPEEDSTSYLNRLEEAFCRDFRCC 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,227,422
Number of Sequences: 5004
Number of extensions: 67938
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)