Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_B10
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 134 7e-32
11_01_0155 - 1287003-1287452 134 7e-32
07_03_0227 - 15398371-15398925 30 1.8
11_06_0446 - 23703088-23703681 29 4.1
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649... 29 4.1
12_02_1113 - 26165074-26165889,26166077-26166202,26166294-261664... 28 7.2
11_06_0598 - 25391923-25393197 28 9.6
11_01_0758 + 6362500-6363233,6363709-6365500 28 9.6
11_01_0523 - 4109070-4109984,4110532-4110936 28 9.6
10_01_0039 + 447573-448911,451247-451296,451322-451423 28 9.6
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 9.6
01_01_1102 - 8734984-8736090,8736430-8736557,8736671-8736708,873... 28 9.6
>12_01_0152 - 1168928-1169377
Length = 149
Score = 134 bits (324), Expect = 7e-32
Identities = 59/74 (79%), Positives = 69/74 (93%)
Frame = -3
Query: 352 KGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 173
+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKF
Sbjct: 76 RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135
Query: 172 GGPGARARYQKSYR 131
GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149
Score = 83.8 bits (198), Expect = 1e-16
Identities = 36/71 (50%), Positives = 51/71 (71%)
Frame = -2
Query: 560 REPIQAVQVFGGKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 381
R P VQ FG KKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 380 SMVDIRVTVQG 348
+D+R+ V+G
Sbjct: 67 KDIDMRIRVRG 77
>11_01_0155 - 1287003-1287452
Length = 149
Score = 134 bits (324), Expect = 7e-32
Identities = 59/74 (79%), Positives = 69/74 (93%)
Frame = -3
Query: 352 KGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 173
+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKF
Sbjct: 76 RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135
Query: 172 GGPGARARYQKSYR 131
GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149
Score = 83.8 bits (198), Expect = 1e-16
Identities = 36/71 (50%), Positives = 51/71 (71%)
Frame = -2
Query: 560 REPIQAVQVFGGKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 381
R P VQ FG KKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 380 SMVDIRVTVQG 348
+D+R+ V+G
Sbjct: 67 KDIDMRIRVRG 77
>07_03_0227 - 15398371-15398925
Length = 184
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +2
Query: 410 VPEVCTAAVWAQPSPMGARLHAAFH--DHACNTQLRWRF 520
+P +C A W P+ A H FH C+ + RW +
Sbjct: 23 LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61
>11_06_0446 - 23703088-23703681
Length = 197
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 401 LLGKEKFSMVDIRVTVQGWWSCSTS 327
LLGKEK RVT+ W+ CST+
Sbjct: 86 LLGKEKQWFYANRVTINIWYKCSTA 110
>01_05_0024 -
17262504-17263308,17264251-17264399,17264879-17264978,
17265829-17265953,17267565-17267743,17269648-17270698
Length = 802
Score = 29.1 bits (62), Expect = 4.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 334 LHDHHPWTVTLMSTIENFSLP 396
+H HH W + ++S I NF P
Sbjct: 543 MHHHHKWQLVIISGIRNFEAP 563
>12_02_1113 -
26165074-26165889,26166077-26166202,26166294-26166457,
26166539-26166576,26166670-26166885,26166984-26167145,
26167212-26167497,26167585-26167761,26167864-26167971,
26168076-26168175,26168283-26168359,26168608-26168803,
26169032-26169363,26169476-26169589,26169651-26169753
Length = 1004
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 681 LGDTIEQVCTKKQAVPVRNSSST 613
LGD I + TK Q +P RNS T
Sbjct: 607 LGDVISALATKSQHIPFRNSKLT 629
>11_06_0598 - 25391923-25393197
Length = 424
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +3
Query: 150 LARAPGPPNFLGSQRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAF 302
LA PP L S TS L + T + ++ S+TY AIR F
Sbjct: 254 LATLVSPPKLLQSLNISGITSGLPDWITELDQLTKITLSNTYLGEDAIRVF 304
>11_01_0758 + 6362500-6363233,6363709-6365500
Length = 841
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 504 NCGGGFLTSEYLDGLDGLTSCLLHSSHFDREKPVGQQCSR 623
NCG +T+ + + LTSC HS + + KP+ + S+
Sbjct: 270 NCGSRIVTTTKFEEV-ALTSCGYHSKYVFKIKPLSEDLSK 308
>11_01_0523 - 4109070-4109984,4110532-4110936
Length = 439
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 349 GGGHVAQVYAIRQAISKALIAFY 281
GGG V +++A++KAL+AFY
Sbjct: 48 GGGGFFDVGRLKEALAKALVAFY 70
>10_01_0039 + 447573-448911,451247-451296,451322-451423
Length = 496
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -1
Query: 681 LGDTIEQVCTKKQAVPVRNSSSTVGLLAFLCQNGCCAGG 565
LG T+EQVC + V STV L+A L G G
Sbjct: 337 LGQTVEQVCEARLQVTGEYVRSTVDLMASLRGRGMVFDG 375
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 467 NGRPLDLVEPRLLQYKLQEPILLL 396
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>01_01_1102 -
8734984-8736090,8736430-8736557,8736671-8736708,
8736815-8737030,8737252-8737413,8738381-8738559,
8738693-8738799,8738918-8739082,8739201-8739284,
8739364-8739559
Length = 793
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1
Query: 681 LGDTIEQVCTKKQAVPVRNSSST 613
LGD I+ + TKK VP RNS T
Sbjct: 353 LGDVIDALQTKKPHVPYRNSKLT 375
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,249,679
Number of Sequences: 37544
Number of extensions: 536894
Number of successful extensions: 1466
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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