Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_B09
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 281 1e-76
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 138 6e-34
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 120 3e-28
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 114 1e-26
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 94 2e-20
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 76 7e-15
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 72 1e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 69 8e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 42 8e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 281 bits (688), Expect = 1e-76
Identities = 130/154 (84%), Positives = 137/154 (88%)
Frame = -3
Query: 788 DFEQEMATXXSXXSXEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNS 609
DFEQE+ T S EKSYELPDGQVITIGNERFR PEALFQPS LG+E GIHE TYNS
Sbjct: 222 DFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNS 281
Query: 608 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKETTALAPSTMKIKIIAPPERKYSVWI 429
IMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKE ALAPS+MK+KI+APPERKYSVWI
Sbjct: 282 IMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWI 341
Query: 428 GGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 327
GGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 342 GGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 138 bits (335), Expect = 6e-34
Identities = 64/154 (41%), Positives = 97/154 (62%)
Frame = -3
Query: 788 DFEQEMATXXSXXSXEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNS 609
DF E+ + +Y+LPD Q IT+G E F PE LF P +G EA G+H + S
Sbjct: 227 DFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKS 286
Query: 608 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKETTALAPSTMKIKIIAPPERKYSVWI 429
I+ D+D+R LY+N VLSGG+T+ G +R E A++ ++KI A PER ++ W+
Sbjct: 287 ILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWL 346
Query: 428 GGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 327
GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 347 GGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 120 bits (288), Expect = 3e-28
Identities = 61/141 (43%), Positives = 91/141 (64%), Gaps = 12/141 (8%)
Frame = -3
Query: 740 KSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANT 561
++Y LPDG+VI +G+ER+ CPE LFQP +G E G+ E +++I DVDIRK LY
Sbjct: 238 RNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAI 297
Query: 560 VLSGGTTMYPGIADRMQKETTAL--------APSTM---KIKIIAPPERKYSVWIGGSIL 414
VLSGG++MY G+ R++KE L P+ + K+KI P R+++V+IGG++L
Sbjct: 298 VLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVL 357
Query: 413 AS-LSTFQQMWISKQEYDESG 354
A ++ MW+SK E++E G
Sbjct: 358 ADIMAQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 114 bits (275), Expect = 1e-26
Identities = 60/140 (42%), Positives = 79/140 (56%), Gaps = 11/140 (7%)
Frame = -3
Query: 740 KSYELPDGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHETTYNSIMKCDVD 588
K +E PDG G ERFR E LF PSF + G+HE Y SI+ CD +
Sbjct: 279 KPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSE 338
Query: 587 IRKDLYANTVLSGGTTMYPGIADRMQKETTALAP-STMKIKII-APPERKYSVWIGGSIL 414
+R L N V++GGT++ PG+++R+Q E LA S + + +VW GGSIL
Sbjct: 339 LRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSIL 398
Query: 413 ASLSTFQQMWISKQEYDESG 354
ASL FQ +W+SKQEYDE G
Sbjct: 399 ASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 93.9 bits (223), Expect = 2e-20
Identities = 47/108 (43%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Frame = -3
Query: 635 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKETTALAPSTMKIKIIAP 456
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E + L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 455 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 330
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 75.8 bits (178), Expect = 7e-15
Identities = 42/128 (32%), Positives = 63/128 (49%)
Frame = -3
Query: 716 QVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 537
QV+ + NERF PE LF PS + + GI E S+ +I+ L N V GG
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331
Query: 536 YPGIADRMQKETTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDES 357
+PG R+ E +LAP+ ++K+ P + W S + L + I++ EY E
Sbjct: 332 FPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEH 390
Query: 356 GPSIVHRK 333
G +I+ RK
Sbjct: 391 GANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 71.7 bits (168), Expect = 1e-13
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 15/140 (10%)
Frame = -3
Query: 710 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 534
I +G ERF PE F P + + E N + +D+RK LY N VLSGG+T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
Query: 533 PGIADRMQKETTALAPST--------------MKIKIIAPPERKYSVWIGGSILASLSTF 396
+R+Q++ + + + +I+ ++ +VW GGS+LA F
Sbjct: 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399
Query: 395 QQMWISKQEYDESGPSIVHR 336
+K +Y+E G SI R
Sbjct: 400 GSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 68.9 bits (161), Expect = 8e-13
Identities = 31/118 (26%), Positives = 61/118 (51%)
Frame = -3
Query: 695 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 516
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 515 MQKETTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 342
+++E T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 42.3 bits (95), Expect = 8e-05
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = -3
Query: 581 KDLYANTVLSGGTTMYPGIADRMQKETTALAPSTMKIKIIAPP---ERKYSVWIGGSILA 411
K+LY++ ++ GG +PG A +++ + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 410 SLSTFQQMWISKQEYDESGPSIVHRK 333
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 434 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 333
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,859
Number of Sequences: 5004
Number of extensions: 57807
Number of successful extensions: 183
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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