Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_B05
(865 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom... 90 4e-19
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom... 81 3e-16
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ... 67 3e-12
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le... 59 7e-10
SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 29 0.64
SPCC188.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 29 0.64
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|... 27 3.4
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc... 26 6.0
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 26 6.0
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ... 26 7.9
>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 89.8 bits (213), Expect = 4e-19
Identities = 43/75 (57%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
Frame = -2
Query: 609 VHGTAPDIAGKDMANPTALLLSAIMMLRHLQLNDHADLVQNACYEVLREG-RALTGDLGG 433
VHGTAPDIAGK +ANPTALLLS++MML+H+ LND+A +++A ++ L A T DLGG
Sbjct: 303 VHGTAPDIAGKGLANPTALLLSSVMMLKHMNLNDYAKRIESAIFDTLANNPDARTKDLGG 362
Query: 432 TAKCSEFTNAIISKL 388
+ ++T+AIISKL
Sbjct: 363 KSNNVQYTDAIISKL 377
>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 80.6 bits (190), Expect = 3e-16
Identities = 36/67 (53%), Positives = 49/67 (73%)
Frame = -2
Query: 588 IAGKDMANPTALLLSAIMMLRHLQLNDHADLVQNACYEVLREGRALTGDLGGTAKCSEFT 409
I G+ ANPTA +LSA +MLRHL L D+ADL+ A Y V+ EG+ LT DLGG+A +FT
Sbjct: 287 ITGRGEANPTAAILSACLMLRHLGLKDYADLINAATYSVIEEGKTLTKDLGGSASTGDFT 346
Query: 408 NAIISKL 388
+AI+ ++
Sbjct: 347 HAILERM 353
>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 362
Score = 66.9 bits (156), Expect = 3e-12
Identities = 32/75 (42%), Positives = 48/75 (64%)
Frame = -2
Query: 609 VHGTAPDIAGKDMANPTALLLSAIMMLRHLQLNDHADLVQNACYEVLREGRALTGDLGGT 430
VHG+APDIAG+ +ANP A S +ML + D A + A +VL EG+ LT DLGG
Sbjct: 287 VHGSAPDIAGRGIANPVATFRSVALMLEFMGHQDAAADIYTAVDKVLTEGKVLTPDLGGK 346
Query: 429 AKCSEFTNAIISKLN 385
+ +E T+A+++ ++
Sbjct: 347 SGTNEITDAVLANIH 361
>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
Leu1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 371
Score = 59.3 bits (137), Expect = 7e-10
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
Frame = -2
Query: 609 VHGTAPDIAGKDMANPTALLLSAIMMLRH-LQLNDHADLVQNACYEVLRE----GRAL-T 448
+HG+APDIAGK + NP +LSA ++LR+ L A+ ++ A +VL + GR L T
Sbjct: 288 IHGSAPDIAGKGIVNPVGTILSASLLLRYGLNAPKEAEAIEAAVRKVLDDTSIGGRGLYT 347
Query: 447 GDLGGTAKCSEFTNAIISKL 388
DLGG A ++ T A++ +L
Sbjct: 348 RDLGGEASTADITKAVVEEL 367
>SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 100
Score = 29.5 bits (63), Expect = 0.64
Identities = 8/13 (61%), Positives = 13/13 (100%)
Frame = -2
Query: 156 SNHHHSYLYHCQH 118
+NH+H++LYHCQ+
Sbjct: 78 NNHNHAFLYHCQY 90
>SPCC188.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 88
Score = 29.5 bits (63), Expect = 0.64
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 286 RCVTVTPKYKRIIIEFKLLYSI 221
RCV + P+YK+ +I +YSI
Sbjct: 5 RCVLIKPEYKKFLIHVNFIYSI 26
>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 336
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 410 VNSLHFAVPPRSPVKALPSRNTS*QAFW 493
+N + PP P+K + S NTS Q FW
Sbjct: 193 INPPYVYGPPIHPMKNMDSLNTSNQIFW 220
>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 324 SLNKYFFHEYSNKGTAPIQPNSV 392
S NK F+E+ N T P + NSV
Sbjct: 216 STNKNLFYEFPNGTTEPFEKNSV 238
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 315 TFHSLNKYFFHEYSNKGTAPIQPN 386
TF NK+ FHEY K + I P+
Sbjct: 244 TFPDWNKFIFHEYPPKPWSEILPS 267
>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 539
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 282 HLKHQNATFDVTFHSLNKYFFHEYSNKGTAP 374
H KH N F LNKY FH+ ++ AP
Sbjct: 52 HFKHSN--FASFVRQLNKYDFHKVRHEEGAP 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,528
Number of Sequences: 5004
Number of extensions: 46745
Number of successful extensions: 89
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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