Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_B03
         (967 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   149   4e-37
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   147   2e-36
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    64   2e-11
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    28   1.7  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  149 bits (362), Expect = 4e-37
 Identities = 67/80 (83%), Positives = 72/80 (90%)
 Frame = -2

Query: 369 PPXXPGGDLAKVQRAVCMLSNTTAIAEXWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 190
           P   PG  +AKV RAVCMLSNTT+IAE W+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFS
Sbjct: 364 PQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFS 423

Query: 189 EAREDLAALEKDYEEVGMDS 130
           EAREDLAALE+DYEEVG DS
Sbjct: 424 EAREDLAALERDYEEVGQDS 443


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  147 bits (357), Expect = 2e-36
 Identities = 66/80 (82%), Positives = 72/80 (90%)
 Frame = -2

Query: 369 PPXXPGGDLAKVQRAVCMLSNTTAIAEXWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 190
           P    G ++AKV RAVCMLSNTT+IAE W+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFS
Sbjct: 360 PQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFS 419

Query: 189 EAREDLAALEKDYEEVGMDS 130
           EAREDLAALE+DYEEVG DS
Sbjct: 420 EAREDLAALERDYEEVGQDS 439


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
 Frame = -2

Query: 336 VQRAVCMLSNTTAIAEXWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAA 166
           ++ +   + N+T+I E + RL  +F  M+ ++AF+HWY GEGM+E EF+EA     DL +
Sbjct: 361 LKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query: 165 LEKDYEEVGMD 133
             + Y+E G+D
Sbjct: 421 EYQQYQEAGID 431


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -3

Query: 284 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 111
           G+   TS TS T S       S++     S+P P   W P+        S+ TP+   V 
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207

Query: 110 EPKSTK 93
           EP+ TK
Sbjct: 208 EPRFTK 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,829
Number of Sequences: 5004
Number of extensions: 35757
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)