Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_B02
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...   104   1e-23
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    27   3.1  
SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces pombe...    26   7.2  

>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score =  104 bits (250), Expect = 1e-23
 Identities = 70/226 (30%), Positives = 109/226 (48%), Gaps = 11/226 (4%)
 Frame = -3

Query: 783 AYXPLKDMVTYXNTHXPHVVIMTGPFXDSEHXQGQRQYDGRDI*LVVWEILDSXGELSNT 604
           ++ PLK M++Y N +   +VI+ GPF D  H   +           + E+         +
Sbjct: 320 SFSPLKSMISYVNKNPVDLVILCGPFLDINHILIRTGNITGTSATSLEELFKERVTPILS 379

Query: 603 SPVTKIYIVSNLKDAFHVN-VYPTPPY--VSRRKHPNIHFVPDPCTLTINGIHVGVTSTD 433
                  ++ ++ DA   +  +P   +  V+     N    P+PC  +IN +  GV++ D
Sbjct: 380 QLTCPCILIPHINDAASDHPAWPQDAFNRVALGLPSNFKCFPNPCMFSINDVVFGVSTND 439

Query: 432 ILMHISQEEI-SLGTGGDKLSRLASHVLSQQTYYPLCPA-------PVPLDXXXXXXXXX 277
           IL+H S+EE+  L + G+  +RL SHVL Q+ +YPL P        P  LD         
Sbjct: 440 ILLHTSREELFRLPSHGNLFARLVSHVLHQRHFYPLFPGGSLEKCNPSNLDIAHLKLGEF 499

Query: 276 XXASPHLLVLPSNFRYFVKDVNGCVVVNPEHLTKGTGGGTFTRVLI 139
               P +L+LPS+ RYFVK+V   V +NP   TKG   GTF ++ I
Sbjct: 500 LNTMPDILILPSDLRYFVKNVENVVSLNPGKATKGINLGTFAKLTI 545


>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 612 SNTSPVTKIYIVSNLKDAFHVNVYPTPPYVSRRKHPNI 499
           + T   T   I S+ K+   V+VYP    V R+K PN+
Sbjct: 49  AGTGKFTPRIIASHPKEIIAVDVYPEMLDVLRKKFPNV 86


>SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 537 TPPYVSRRKHPNIHFVPDPCTLTING 460
           T  Y S+R  P  H+V   CTLT NG
Sbjct: 208 TVHYQSQRFGPIAHWVELDCTLTSNG 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,040
Number of Sequences: 5004
Number of extensions: 56553
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)