Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_B02
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0846 - 7920960-7921112,7921247-7921373,7921455-7921585,792... 103 2e-22
09_04_0517 - 18253325-18253870,18254209-18254781,18254888-182551... 29 3.3
03_02_0214 - 6486899-6487213,6487306-6487579,6487944-6489937 29 5.7
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407... 28 7.6
05_07_0284 - 28943527-28943625,28944417-28944785 28 7.6
03_06_0740 + 35889894-35890982 28 7.6
07_03_0450 + 18320916-18321147,18321526-18321551,18321978-18322148 28 10.0
03_03_0156 + 14939355-14939435,14939559-14939624,14940331-149404... 28 10.0
>12_01_0846 - 7920960-7921112,7921247-7921373,7921455-7921585,
7921992-7922033,7922126-7922167,7922416-7922508,
7922590-7922685,7923281-7923448,7923519-7923594,
7923687-7923766,7923855-7923950,7924023-7924392,
7925356-7925431,7925559-7925649
Length = 546
Score = 103 bits (247), Expect = 2e-22
Identities = 72/233 (30%), Positives = 116/233 (49%), Gaps = 20/233 (8%)
Frame = -3
Query: 729 VVIMTGPFXDSEHXQGQR-QYDGRDI*LVVWEILDSXGELSN-TSPVTKIYIVSNLKDAF 556
V+ GPF DS+H + ++ D + ++EIL + + ++ ++ +++DA
Sbjct: 316 VLSSMGPFIDSDHPEIKKGAVDKSFQDIFLFEILRKLQDFTQYLGHNVRVILIPSVRDAH 375
Query: 555 HVNVYPTPPYVSRRKHPNIHFVP---DPCTLTINGIHVGVTSTDILMHISQEEISLGTGG 385
H V+P P + H + +P + N IH G + DIL H+S EEIS G
Sbjct: 376 HDFVFPQPAFDLNLPEDITHQITCLANPSLFSCNEIHFGCCTMDILKHLSGEEISRKPPG 435
Query: 384 ----DKLSRLASHVLSQQTYYPLCPAP--VPLDXXXXXXXXXXXASPHLLVLPSNFRYFV 223
D++ R+ +H+L QQ+YYPL P P VPLD ++P +L+LPS+ FV
Sbjct: 436 EKHGDRIGRICTHILKQQSYYPLYPPPAGVPLDFSLANGALEIASAPDVLLLPSDLAPFV 495
Query: 222 K---------DVNGCVVVNPEHLTKGTGGGTFTRVLIDSDNATKRIAAQIVRI 91
K + + +NP L KG GGGTF + + D T + +A ++RI
Sbjct: 496 KVLSLDESSEEPKRFICMNPGRLAKGIGGGTFVELNYNED--TDKTSASLIRI 546
>09_04_0517 -
18253325-18253870,18254209-18254781,18254888-18255100,
18255554-18255685,18255804-18255944,18256104-18256325
Length = 608
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 615 LSNTSPVTKIYIVSNLKDAFHV--NVYPTPPYVSRRKHPNIH 496
L N P+ +I I ++A NV PT YV+R K P H
Sbjct: 113 LKNHQPIVQILIDGKNRNAIDDDRNVLPTMVYVAREKRPQYH 154
>03_02_0214 - 6486899-6487213,6487306-6487579,6487944-6489937
Length = 860
Score = 28.7 bits (61), Expect = 5.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 477 CRDPVQNVCWGVSFGSR 527
C+D Q CWG+ FG R
Sbjct: 552 CKDHAQRRCWGIGFGLR 568
>11_01_0520 +
4078075-4078198,4078726-4078957,4079068-4079147,
4079256-4079409,4079438-4079494,4080733-4080811,
4081013-4081094,4081168-4081223,4081310-4081492
Length = 348
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 495 FVPDPCTLTINGIHVGVTSTDILMHI 418
F + C LT N +H GV +T++ HI
Sbjct: 241 FQEEGCNLTANSLHPGVIATNLPRHI 266
>05_07_0284 - 28943527-28943625,28944417-28944785
Length = 155
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = -3
Query: 567 KDAFHVNVYPTPPYVSRRKHPNIHFVPDPCTLTINGIHVGVTSTDILMHIS---QEEISL 397
+ H P PP R++ FVP L G+H + T L IS +++ L
Sbjct: 23 RSLLHGTPPPPPPSTGRKRQREDEFVPSVTELEQAGVHFSRSPTRSLRDISFRPGDDVRL 82
Query: 396 GTGG 385
+GG
Sbjct: 83 LSGG 86
>03_06_0740 + 35889894-35890982
Length = 362
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 384 DKLSRLASHVLSQQTYYPLCPA 319
DK++RLA+ + YYP CPA
Sbjct: 201 DKMTRLAAAQSMRMNYYPPCPA 222
>07_03_0450 + 18320916-18321147,18321526-18321551,18321978-18322148
Length = 142
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -3
Query: 447 VTSTDILMHISQ-EEISLGTGGDKLSRLASHVLSQQTYYPLC 325
+T+ L H ++ EE++ G+GG KL+R + V ++ P+C
Sbjct: 10 ITNNGGLAHWTRTEELAEGSGGGKLTRASLQVAWRELDRPIC 51
>03_03_0156 +
14939355-14939435,14939559-14939624,14940331-14940414,
14940796-14940875,14941313-14941358,14941456-14941566,
14942224-14942290,14942615-14942630,14942871-14942931,
14943015-14943145,14943243-14943360,14944053-14944176,
14944517-14944618,14944717-14944785,14946250-14946329
Length = 411
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 244 LQFQIFC*GCQRMCSCQSRTFNKRHRRRDLHSCINR*RQRHETNCS 107
LQ IFC +CS + F RH++R+ ++R + CS
Sbjct: 347 LQAAIFCEALSCLCSPEPDPFEPRHKKRNHIPLMSRQTELASKQCS 392
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,131,120
Number of Sequences: 37544
Number of extensions: 401197
Number of successful extensions: 1042
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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