Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_B01
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    29   1.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.3  
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    26   7.1  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   7.1  

>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 185 AISKIRSTIF*NVYFFYLCHVC 120
           A+  I S IF N +FFYLC  C
Sbjct: 27  ALVIILSVIFINFFFFYLCRCC 48


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
 Frame = -2

Query: 746  PXPPXXXPVVK-HVGVPRXGGPSTGPYPRACACSLPPSRSQCLLLXPVEKP 597
            P P    PV K  VGVP    PST P     +  LPP         PV  P
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 587 GRPLASQLGTAKGTGFSTGVRSRHMHGGXGL 679
           G  +  Q G +KG G S  + +++ +GG G+
Sbjct: 153 GELMGRQCGASKGKGGSMHIFAKNFYGGNGI 183


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 84  NLLYHYVHVHLSAYMT*IKKIYILKDSGSNFADGLAVLGEIFIN 215
           +L++ Y  +H   ++     I  LKDSG ++  GL+ L  +F+N
Sbjct: 415 SLVFRYPLLHSKIHLA----ISTLKDSGCDWNVGLSYLNWLFVN 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,068
Number of Sequences: 5004
Number of extensions: 37384
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)