Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_B01
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0347 + 24564589-24565296 30 1.8
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291... 29 3.2
03_01_0563 + 4169144-4169516,4170362-4170648,4171339-4171576,417... 29 3.2
02_02_0582 - 11798252-11798908 29 3.2
01_06_0719 + 31474028-31474476,31474881-31474939,31479145-31479983 29 4.2
05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069 29 5.6
12_01_0471 - 3672309-3672740,3673159-3673251,3673271-3673399,367... 28 7.4
08_02_1200 + 25234208-25234370,25238527-25238819,25240003-252402... 28 7.4
05_07_0327 - 29275916-29276017,29276101-29276283,29276392-292764... 28 7.4
11_06_0610 - 25449085-25453284 28 9.7
08_02_1199 - 25209454-25210896,25211005-25211519,25211751-252119... 28 9.7
04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412 28 9.7
02_05_0999 + 33405982-33408279,33408356-33408466,33408551-334087... 28 9.7
>04_04_0347 + 24564589-24565296
Length = 235
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -3
Query: 676 AXTPVHVPAPYPRREASAFCCXQLRSQWPTPVHVPVDXP 560
A P H P+ + R A A + S WP P H P P
Sbjct: 109 ATAPAHAPSSHHDRHAPA----PVHSSWPWPAHAPAPAP 143
>07_01_0389 -
2915191-2915604,2915696-2915752,2915867-2915922,
2916053-2916113,2916243-2916365,2916505-2916537,
2916617-2916709,2916839-2916934,2917025-2917203,
2917344-2917530,2918051-2918184,2918311-2918518,
2918598-2918633,2918785-2919241,2919633-2919736,
2920489-2920569,2920646-2920697,2920837-2920876,
2920991-2921085,2921241-2921383,2921899-2922006,
2922120-2922221,2922302-2922348,2922425-2922554,
2923173-2923304,2923404-2923616,2923709-2923963,
2924053-2924799
Length = 1460
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/71 (28%), Positives = 25/71 (35%)
Frame = -2
Query: 785 RKXXPXPXWKLXGPXPPXXXPVVKHVGVPRXGGPSTGPYPRACACSLPPSRSQCLLLXPV 606
RK P P P PP P P S+ A + + C LL P+
Sbjct: 6 RKRPPQPPPPPSPPNPPPRAPRATRTATPDDASSSSAVDDAAALLA----EAGCTLLVPL 61
Query: 605 EKPVAYPRPCS 573
+P A P P S
Sbjct: 62 HQPPALPSPLS 72
>03_01_0563 +
4169144-4169516,4170362-4170648,4171339-4171576,
4172473-4172796,4172914-4172999,4173124-4173231,
4173315-4173619,4173733-4173960,4174109-4174877
Length = 905
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 701 PRXGGPSTGPYPRACACSLPPSRSQCLLLXPVEKP 597
P GG PYPR C PP+ + L VEKP
Sbjct: 277 PILGGEKI-PYPRRCRTGRPPTDTNMLAESRVEKP 310
>02_02_0582 - 11798252-11798908
Length = 218
Score = 29.5 bits (63), Expect = 3.2
Identities = 27/75 (36%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = +2
Query: 524 GNGHGLLNVHGVRXVDRNMDGGRPLA-SQLGTAKGTGFSTGVRSRHMHGGXGLST--GXL 694
G G G+ HG VD + GG A + G G G GV HGG +ST G
Sbjct: 95 GGGVGIDVGHG--GVDVGIGGGGGAAVNGGGVHAGGGGGGGVGVHIGHGGVSISTGGGGG 152
Query: 695 XGGHRRASQRGXGLG 739
GG A G G G
Sbjct: 153 AGGGESAGSSGGGFG 167
>01_06_0719 + 31474028-31474476,31474881-31474939,31479145-31479983
Length = 448
Score = 29.1 bits (62), Expect = 4.2
Identities = 23/72 (31%), Positives = 25/72 (34%)
Frame = +2
Query: 524 GNGHGLLNVHGVRXVDRNMDGGRPLASQLGTAKGTGFSTGVRSRHMHGGXGLSTGXLXGG 703
G G GL G GG LG +GTGF G G G TG + GG
Sbjct: 227 GRGGGLTGGGGEGNTGGGGGGGGNCGLGLGFGEGTGFGVG-------AGPGAGTGAITGG 279
Query: 704 HRRASQRGXGLG 739
G G G
Sbjct: 280 GGGGKGGGGGGG 291
>05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069
Length = 228
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +2
Query: 599 ASQLGTAKGTGFSTGVRSRHMHGGXGLSTGXLXGGHRRASQRGXGLG 739
AS +GT GTG STG + GG G + G G G G
Sbjct: 108 ASGVGTGMGTGTSTGTGTGVGTGGTGTGGAGVGAGTGTGVGTGTGTG 154
>12_01_0471 -
3672309-3672740,3673159-3673251,3673271-3673399,
3673400-3673448,3674291-3674378,3674477-3674573,
3675195-3675278,3675377-3675464,3676589-3676715,
3676774-3676848,3676934-3677042,3677125-3677448,
3677863-3678039
Length = 623
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 524 GNGHGLLNVHGVRXVDRNMDGGRPLASQLGTAKGTGFSTGV 646
GNG+ L+ G V R + G + LGT+ G G S V
Sbjct: 99 GNGNRTLSFVGGNGVSRAVSGSSRIGGGLGTSGGIGSSQAV 139
>08_02_1200 +
25234208-25234370,25238527-25238819,25240003-25240243,
25240523-25240855,25240940-25241025,25241133-25242575
Length = 852
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 701 PRXGGPSTGPYPRACACSLPPSR 633
P GG PYPR C PPS+
Sbjct: 209 PVLGGSKQFPYPRRCRTGRPPSK 231
>05_07_0327 -
29275916-29276017,29276101-29276283,29276392-29276453,
29276590-29276671,29276922-29276987,29277297-29277359,
29277466-29277570,29277678-29277887,29277988-29278103,
29278875-29279082
Length = 398
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 368 RDWLLDCYGHVPLNSYGVGPVNGHFDGNGDWPVDR 472
+D L+D Y +VP YG+ P N D P DR
Sbjct: 67 KDGLMDNYKNVPQFLYGLSPAQIEMFMNDDNPYDR 101
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Frame = -2
Query: 782 KXXPXPXWKLXGPXPPXXX-PVVKHVGVPRXGGPSTGPYPRACACSLPPSRSQCLLLXPV 606
K P P + P P P H G P S+ P P A S PP +S P
Sbjct: 804 KSPPTPAEESSPPTPEKSPSPPSGHEGTPPSPVKSSSPPPEAHVSSPPPEKSSS---PPP 860
Query: 605 EKPVAYPRP 579
E V+ P P
Sbjct: 861 EAHVSSPPP 869
>08_02_1199 -
25209454-25210896,25211005-25211519,25211751-25211991,
25215330-25215625,25216320-25216464
Length = 879
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 701 PRXGGPSTGPYPRACACSLPPSR 633
P GG PYPR C PPS+
Sbjct: 204 PVLGGNKQFPYPRRCRTGRPPSK 226
>04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412
Length = 184
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/71 (28%), Positives = 21/71 (29%)
Frame = -2
Query: 782 KXXPXPXWKLXGPXPPXXXPVVKHVGVPRXGGPSTGPYPRACACSLPPSRSQCLLLXPVE 603
K P P + P PP H P P P AC P S C P
Sbjct: 103 KLIPFPYPYVYPPPPPCGGCATPHCCDCHPKPPPPAPAPAKPACGCPAWSSPCHCYPPPA 162
Query: 602 KPVAYPRPCSC 570
P YP C
Sbjct: 163 MP-PYPPVLVC 172
>02_05_0999 +
33405982-33408279,33408356-33408466,33408551-33408703,
33408870-33409033,33409113-33409210,33409296-33409474,
33409588-33409675,33410285-33410451
Length = 1085
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 709 SVSPVQXARRQAXTPVHVPAPY 644
++ P+Q RR+A +PVH +PY
Sbjct: 494 NLPPLQSLRRRANSPVHTGSPY 515
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,464,614
Number of Sequences: 37544
Number of extensions: 308877
Number of successful extensions: 854
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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