Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_A24
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    60   5e-10
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   3.9  
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos...    27   3.9  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    26   6.9  

>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 59.7 bits (138), Expect = 5e-10
 Identities = 23/81 (28%), Positives = 48/81 (59%)
 Frame = -2

Query: 749 NPDLTFDEIISELQIEEKDVEAFVIEVLKTRLVRARMDQAQRTVRVSNTMHRTFGREQWQ 570
           N  L++ ++   L+I+E +VE ++I+V++  LV  RM Q  +T+ +  + +R FG+ +W 
Sbjct: 297 NNTLSYGDVAKSLKIDENEVELWIIDVIRAGLVEGRMSQLTKTLSIHRSSYRVFGKHEWV 356

Query: 569 QLRDVLLAWRANVHQAHEAMK 507
            L + L  W +++    + M+
Sbjct: 357 ALHEKLAKWGSSLRYMLQVME 377


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -2

Query: 128  FFKQPKFWN*CHLIPTTSCDLCNKNKF----IILYQ*ICQ 21
            FFK P+  +  H IP T   LC+   +    +I+++ ICQ
Sbjct: 1547 FFKSPEIADLNHYIPKTDPRLCDTKTYEESKLIIWKLICQ 1586


>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 662 TRLVRARMDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRANVHQAHEAMKSV 501
           T L + R +Q+ R      + H+   R ++     VL +WR +V+     +KSV
Sbjct: 115 TELSKLRENQSSRLREAEKSKHKNKTRTRY-----VLFSWRTDVNDIERKLKSV 163


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 236 YQQSYFKIK-RQRYLFKQPNYISKLKERYLFKQPNLFLS 349
           Y   +F    +  +L++  + +SK   RY  K P +FLS
Sbjct: 178 YSNDWFAATPKHPFLYQAIHNLSKFNHRYFTKYPTVFLS 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,530
Number of Sequences: 5004
Number of extensions: 47834
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)