Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_A23
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    29   0.76 
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    29   1.0  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    28   1.8  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    24   4.1  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    27   4.1  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   5.4  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    26   5.4  

>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
 Frame = -2

Query: 361 NMASKRKTDGK---PRKTKDKSEKAELDREWQQIQNIIQK--RKAPLHSDEPGV 215
           N ++K+ + G+   P+K KDK  ++ + +  ++I+N+     +   LH D PG+
Sbjct: 12  NASTKKYSRGRKLNPKKIKDKKLRSNIQKIEERIENVESSLAKTEILHEDNPGL 65


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 354  RQNARRTENQGKRRTKAKRQSWTENGNRFKTSYRNEKR 241
            R+N+RR   Q  RR +  RQ      +R   S R EKR
Sbjct: 1587 RENSRRRARQDDRRDRDSRQQRDRPRDRTSRSAREEKR 1624


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 413 EYSAYMSSKEALPKAAFQYGVKTQDGRKTKENEGQK 306
           E+SAY S++E +  + F Y  K Q   K+ E  G K
Sbjct: 141 EHSAYHSNREEISSSGFYYHRKPQLFEKSLEKLGNK 176


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 24.2 bits (50), Expect(2) = 4.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 351 QNARRTENQGKRRTKAKRQSWTENGNRF 268
           +  +R E+  KRR  AKR ++ + G+ F
Sbjct: 530 ERKKRNEDSWKRRPPAKRVNYQKFGDNF 557



 Score = 20.6 bits (41), Expect(2) = 4.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 465 RREQEGTDRSLGFRHARGILRLHEQQRGVT*GGL 364
           R+E  G    L + +A+ + R    Q+G+  GGL
Sbjct: 466 RKEWNGLTVILPWDYAKFVWRKMMYQKGIRFGGL 499


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
            Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
 Frame = -1

Query: 443  IGRWDFDTQEE-YSAYMSSKEALPKAAFQYGVKTQ-----DGRKTKENEGQKRKGRAGQR 282
            + R+D  T+ E Y+A++  K+ L K   +YG++ +     D  K K  +    K     +
Sbjct: 1092 MARFDISTEYEVYTAFILFKDDLAKTVNEYGLREEVSFQFDLLKKKYTQEYLEKCALSNQ 1151

Query: 281  MATDSKHHTE 252
             A DS  + E
Sbjct: 1152 SAFDSSEYEE 1161


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = -2

Query: 373 RRPSNMASKRKTDGK-PRKTKDKSE-KAELDREWQQIQNIIQKRKAPLHSDEPGVKASK 203
           +R +   +KR+ + K  R+T++ ++ KAE + + +  +N   K  APL S E  V  SK
Sbjct: 674 KREAEENAKREAEEKVKRETEENAKRKAEEEGKREADKNPEIKSSAPLASSEANVDTSK 732


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 572 WTAAPRNVCRALRYCLLLDDEGSGPXSFSVSTGLSKYPV 688
           W  A +N    L+   L +DEGSG  +F V   +SKY +
Sbjct: 645 WKTAHKN---KLQRGALPEDEGSGVDNFRVKRYVSKYTI 680


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,920
Number of Sequences: 5004
Number of extensions: 46691
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)