Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_A21
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    51   2e-07
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    49   6e-07
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    38   0.001
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    27   3.6  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    26   6.3  
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    26   6.3  

>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 6/153 (3%)
 Frame = -3

Query: 583 KWGXDNSPXAKAIGNIGPFAAAGFN--VSYSDNGLFGVVLSVPKDEXXXXXXXXXXXXKT 410
           KW   N+  AKA G    + A        YSD  L  VV+S    +              
Sbjct: 277 KWSHGNTLLAKAAGTASEYKATAVADLTPYSDASLLSVVISGSCPKAIKATASESFKALK 336

Query: 409 SLSA----DAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQIS 242
           SLS+    D +K+G    KT+ L+  +  +    +++A  L + S  S   I+   D+++
Sbjct: 337 SLSSNIPNDVVKSGIAMAKTKYLSAFEPVT--LNAISASSLVSASKGSDAFIS-GFDKVT 393

Query: 241 NNDISQAVSNAAKNKISIGAVGNLAFVPYIDEL 143
              IS+ VS+      S  AVGNL  +PY DEL
Sbjct: 394 PASISKVVSSLLAKPASTVAVGNLDVLPYYDEL 426


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
 Frame = -3

Query: 514 FNVSYSDNGLFGVVL---SVPKDEXXXXXXXXXXXXKTSLSADAIKAGKNQLKTQVLNEA 344
           F+ SYSD GL+G+ L   ++ + +             T  +   ++  K QL+  +L   
Sbjct: 321 FSTSYSDTGLWGIYLVTENLGRIDDLVHFTLQNWARLTVATRAEVERAKAQLRASLLLSL 380

Query: 343 DTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNK-ISIGAVGNL 170
           D+ +++AE +  Q L TG   S  ++   I QI+  D+++  S    +K I++ AVG++
Sbjct: 381 DSTTAIAEDIGRQLLTTGRRMSPQEVDLRIGQITEKDVARVASEMIWDKDIAVSAVGSI 439


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
 Frame = -3

Query: 514 FNVSYSDNGLFGVVLSVPKDEXXXXXXXXXXXXKT---SLSADAIKAGKNQLKTQVLNEA 344
           FN SY+D+GLFG+ +++  D                  S++++  +  KNQLK+ +L   
Sbjct: 349 FNHSYTDSGLFGMFVTILDDAAHLAAPLIIRELCNTVLSVTSEETERAKNQLKSSLLMNL 408

Query: 343 DTGSSLAESLAAQ-GLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKIS 191
           ++     E L  Q     G   +  ++ + ID ++ +D+S+         +S
Sbjct: 409 ESRMISLEDLGRQIQTQNGLYITPKEMIEKIDALTPSDLSRVARRVLTGNVS 460


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -1

Query: 639 KRFCXSRXCKSXRQRFRXKSGGPITLL*QRPSA-TSAHSQRPDSTLATATMDYSAL 475
           + F  +   K      R    G +  +  RPSA T AHSQ P+S+L   +   S L
Sbjct: 32  RNFIVNSRLKRGGGHVRVNRSGRLGSVTMRPSALTRAHSQNPNSSLVNNSSAVSHL 87


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 238 YWISGRYPWRCQQQSEQSRCISLALLMIRQATILCRLH-LTLVSSTDF 378
           Y +S  + W CQ  S   R +S A L     ++ C +H   ++ S +F
Sbjct: 304 YCLSQLFNWSCQNISSYQRLVSFAHL-YSYTSVKCLVHWFQIMRSAEF 350


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 82  C*FIKVGNRLRNKLRF 129
           C  IK+GN LRNK RF
Sbjct: 136 CDIIKIGNILRNKERF 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,899
Number of Sequences: 5004
Number of extensions: 35368
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)