Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_A20
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    26   0.36 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   7.7  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 251 LLILCWVPSFAVNPVNS 301
           + ++CWVP F VN V S
Sbjct: 280 VFLICWVPFFCVNIVTS 296


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 251 LLILCWVPSFAVN 289
           + I+CW+P F VN
Sbjct: 343 VFIICWLPFFVVN 355


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 770 GARXGGACLXNXXP 729
           GAR GG+CL +  P
Sbjct: 427 GARFGGSCLIHGPP 440


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 770 GARXGGACLXNXXP 729
           GAR GG+CL +  P
Sbjct: 427 GARFGGSCLIHGPP 440


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 541 DLLLRTIRLVXLFLSNISGLF 603
           ++ L  IRL   FLS+I+G+F
Sbjct: 525 NMRLEAIRLDGNFLSDINGVF 545


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 5/18 (27%), Positives = 13/18 (72%)
 Frame = +2

Query: 251 LLILCWVPSFAVNPVNSL 304
           + ++CW+P F  N ++++
Sbjct: 627 VFLICWLPFFTCNIMDAI 644


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,169
Number of Sequences: 438
Number of extensions: 4687
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)