Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_A15
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.2  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    27   2.9  
SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe...    26   6.6  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   6.6  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   8.8  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    25   8.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 734 NSPREPLKVLRPTDRXTSLLPTIEEQHFAV 645
           N+PRE    +  +D+ +SLLP   EQ+ A+
Sbjct: 901 NTPREDFVAVEISDQRSSLLPDTVEQNMAI 930


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 440 MVSGTSDVTAAIALDLRARDELTSPPYSKLSL 535
           ++S + +    +ALDLRA  E T  P S +SL
Sbjct: 92  LLSNSDNKVGFLALDLRAHGETTLEPESDMSL 123


>SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 124

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -1

Query: 685 HPCCPPL-RNSTSRSRRR 635
           H C PPL RN+T R R+R
Sbjct: 59  HKCLPPLQRNNTIRKRKR 76


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 414 WCTEKLLYFS*FSMTVF*CCQCS 346
           WC +   YFS FSM +    +CS
Sbjct: 212 WCLDDYWYFSLFSMFMIIALECS 234


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 365 NTVIENQLKYNNFSVHQCFSFSRLSMVS 448
           N ++E   KYN   + QCF   +L++ S
Sbjct: 341 NLIVEKLRKYNFEHIRQCFGSRKLAISS 368


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +2

Query: 503 LTSPPYSKLSLSF-NCHNKPAATDFWANPMSLRLHYFRFQIWFLWASP 643
           LT  P  KL L+  N      AT      +  R  +++F  WF W SP
Sbjct: 303 LTLKPLPKLQLATPNFIFTALATSNLIGILCARSLHYQFYAWFAWYSP 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,919
Number of Sequences: 5004
Number of extensions: 59412
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)