Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_A14
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 246 3e-66
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 241 6e-65
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 100 3e-22
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 52 1e-07
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 32 0.11
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 29 0.77
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.3
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 3.1
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.4
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 246 bits (602), Expect = 3e-66
Identities = 107/133 (80%), Positives = 122/133 (91%)
Frame = -1
Query: 551 PRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 372
PR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG
Sbjct: 311 PRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGS 370
Query: 371 DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLA 192
+AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLA
Sbjct: 371 GIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLA 430
Query: 191 ALEKDYEEVGMDS 153
ALE+DYEEVG DS
Sbjct: 431 ALERDYEEVGQDS 443
Score = 58.0 bits (134), Expect = 1e-09
Identities = 24/31 (77%), Positives = 27/31 (87%)
Frame = -2
Query: 721 DLTEFQTXLXPYPRIHFPLVTYAPVISAEKA 629
DL EFQT L PYPRIHFPLVTY+P++SA KA
Sbjct: 255 DLNEFQTNLVPYPRIHFPLVTYSPIVSAAKA 285
Score = 48.4 bits (110), Expect = 1e-06
Identities = 30/82 (36%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = -3
Query: 789 NLNXXXTXVSSITVLXXXRAXNVTSPSSRLXWXLTPVSTSHWSRTRQSFL--PRRPXHEQ 616
NLN V S A ++ + L P H+ S + + HE
Sbjct: 230 NLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHES 289
Query: 615 LSVAEITNACFEPANQMVKCDP 550
SV EITN CFEP NQMVKCDP
Sbjct: 290 NSVQEITNQCFEPYNQMVKCDP 311
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 241 bits (591), Expect = 6e-65
Identities = 106/133 (79%), Positives = 120/133 (90%)
Frame = -1
Query: 551 PRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 372
PR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G
Sbjct: 307 PRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGS 366
Query: 371 DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLA 192
++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLA
Sbjct: 367 EIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLA 426
Query: 191 ALEKDYEEVGMDS 153
ALE+DYEEVG DS
Sbjct: 427 ALERDYEEVGQDS 439
Score = 59.3 bits (137), Expect = 6e-10
Identities = 25/31 (80%), Positives = 27/31 (87%)
Frame = -2
Query: 721 DLTEFQTXLXPYPRIHFPLVTYAPVISAEKA 629
DL EFQT L PYPRIHFPLVTYAP++SA KA
Sbjct: 251 DLAEFQTNLVPYPRIHFPLVTYAPIVSAAKA 281
Score = 47.6 bits (108), Expect = 2e-06
Identities = 20/25 (80%), Positives = 20/25 (80%)
Frame = -3
Query: 624 HEQLSVAEITNACFEPANQMVKCDP 550
HE SV EITN CFEP NQMVKCDP
Sbjct: 283 HESNSVQEITNQCFEPYNQMVKCDP 307
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 100 bits (239), Expect = 3e-22
Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Frame = -1
Query: 557 ATPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP 378
A PRHG+Y+ L+RG V K+V+ I +++TK + FV+W P + PP
Sbjct: 303 ADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK--- 359
Query: 377 GGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR-- 204
DL + + + N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 360 --DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESN 414
Query: 203 -EDLAALEKDYEEVGMD 156
DL + + Y+E G+D
Sbjct: 415 MNDLVSEYQQYQEAGID 431
Score = 29.1 bits (62), Expect = 0.77
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -2
Query: 721 DLTEFQTXLXPYPRIHFPLVTYAPV 647
DL + + P+PR+HF +V +AP+
Sbjct: 249 DLRKLAVNMVPFPRLHFFMVGFAPL 273
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 52.0 bits (119), Expect = 1e-07
Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Frame = -1
Query: 518 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCM 339
+ +G+ P DV+ ++ I+ +R F+ W P +V ++ + P + ++ + M
Sbjct: 323 IIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----M 377
Query: 338 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYE 171
L+N T+IA + R ++D + + AF+ Y E + E EF +R+ +A L +YE
Sbjct: 378 LANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 721 DLTEFQTXLXPYPRIHFPLVTYAP 650
DL L P PR HF L +Y P
Sbjct: 252 DLVSIIASLIPSPRCHFLLTSYTP 275
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.9 bits (69), Expect = 0.11
Identities = 20/66 (30%), Positives = 26/66 (39%)
Frame = -2
Query: 574 QPDGEMRPPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 395
QP P + S VV P + RP++P P LS V PV+ V +
Sbjct: 531 QPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVP 590
Query: 394 HPPWCP 377
PP P
Sbjct: 591 QPPVAP 596
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 29.1 bits (62), Expect = 0.77
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +2
Query: 494 WVRRHHGTAYSKPCTCHDGGSHFTIWLAG 580
W R H Y+KPC DGG W G
Sbjct: 16 WRRDHPFGFYAKPCKSSDGGLDLMNWKVG 44
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -2
Query: 307 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 134
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 133 EPKSTK 116
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 612 SVAEITNACFEPANQMVKCDPPSWQV 535
SV ++T ACFEP+ V P W +
Sbjct: 800 SVTKVTCACFEPSLDYVVVKIPRWDL 825
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 475 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 389
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 478 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 383
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = -1
Query: 710 VPD*XGALPPYPLPTGHVRASHFCREGLXM---NSFPSPRSQTHASSPPTR 567
VP PP P P+ + R + N+ PSP S + AS+ P R
Sbjct: 1229 VPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTSSSMASAAPAR 1279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,621
Number of Sequences: 5004
Number of extensions: 63967
Number of successful extensions: 229
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -