Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_A13
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    93   5e-20
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    61   2e-10
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    51   2e-07
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    38   0.002
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    33   0.034
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch...    31   0.18 
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    25   9.1  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   9.1  

>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 92.7 bits (220), Expect = 5e-20
 Identities = 43/67 (64%), Positives = 50/67 (74%)
 Frame = -2

Query: 411 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLKWAFSMYDLDGNGYISRQEMLE 232
           FAE+VF  FDA+ +G IDF+EF+CALSVTSRG+L  KL WAF +YDLD NG IS  EML 
Sbjct: 64  FAEYVFNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLR 123

Query: 231 IVTVSVK 211
           IV    K
Sbjct: 124 IVDAIYK 130


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
 Frame = -2

Query: 408 AEHVFRTFDANGDGTIDFREFLCALSVTS-RGKLEQKLKWAFSMYDLDGNGYISRQEMLE 232
           A  +F   D +G G +DF+EF+ +LSV S  G  E+KLK+AF +YD+D +GYIS  E+  
Sbjct: 58  ASRLFSVVDEDGGGDVDFQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYL 117

Query: 231 IVTVSV 214
           ++ + V
Sbjct: 118 VLKMMV 123



 Score = 35.5 bits (78), Expect = 0.008
 Identities = 24/59 (40%), Positives = 31/59 (52%)
 Frame = -2

Query: 396 FRTFDANGDGTIDFREFLCALSVTSRGKLEQKLKWAFSMYDLDGNGYISRQEMLEIVTV 220
           F   DAN  G+ID  EFL   SV S   L  +L   FS+ D DG G +  QE +  ++V
Sbjct: 30  FIKIDANQSGSIDRNEFLSIPSVAS-NPLASRL---FSVVDEDGGGDVDFQEFINSLSV 84


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 23/55 (41%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
 Frame = -2

Query: 384 DANGDGTIDFREFLCALSVTSRGK-LEQKLKWAFSMYDLDGNGYISRQEMLEIVT 223
           DA+G+GTIDF EFL  ++   +    E++++ AF ++D DGNGYI+ +E+  ++T
Sbjct: 58  DADGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLT 112



 Score = 31.5 bits (68), Expect = 0.14
 Identities = 21/74 (28%), Positives = 32/74 (43%)
 Frame = -2

Query: 420 ILQFAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLKWAFSMYDLDGNGYISRQE 241
           I +F E  F  FD + DG I   E    +    +     +L+   +  D DGNG I   E
Sbjct: 11  IAEFRE-AFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTE 69

Query: 240 MLEIVTVSVK*NNN 199
            L ++   +K  +N
Sbjct: 70  FLTMMARKMKDTDN 83



 Score = 29.5 bits (63), Expect = 0.56
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = -2

Query: 396 FRTFDANGDGTIDFREFLCALSVTSRGKLEQKLKWAFSMYDLDGNGYISRQEMLEIVT 223
           F+ FD +G+G I   E    L+       ++++       D DG+G I+ +E   +++
Sbjct: 91  FKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRVIS 148


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 12/61 (19%), Positives = 35/61 (57%)
 Frame = -2

Query: 411 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLKWAFSMYDLDGNGYISRQEMLE 232
           F  H+F  FD +  G++  ++ +  ++      + + + + F +YD +G+G++ + ++L+
Sbjct: 580 FLRHLFLRFDKSMTGSLSLQDLVSGIAELKFRDVMRNISFIFELYDFNGDGFMDKPDVLK 639

Query: 231 I 229
           +
Sbjct: 640 V 640


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 33.5 bits (73), Expect = 0.034
 Identities = 14/67 (20%), Positives = 30/67 (44%)
 Frame = -2

Query: 414 QFAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLKWAFSMYDLDGNGYISRQEML 235
           Q     F+ FD++ D  ID+ E   A+        + ++      +D  G GY+  ++ +
Sbjct: 37  QDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFV 96

Query: 234 EIVTVSV 214
            ++T  +
Sbjct: 97  RVMTEKI 103


>SPAC1687.14c |||EF hand family protein, unknown
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -2

Query: 408 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLKWAFSMYDLDG-NGYISRQEMLE 232
           AE  F  FD    G IDF +   + +       +++L+    M DL G NG +SR+E  E
Sbjct: 14  AEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQ---LMLDLAGTNGKVSREEFAE 70

Query: 231 I 229
           +
Sbjct: 71  L 71


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 347 NSLKSI-VPSPFASNVRNTCSAN 412
           NS  SI +P+PF+S VRN   AN
Sbjct: 53  NSFVSIHMPAPFSSVVRNALKAN 75


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
            Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 45   EARGGRGQPKTRLSGVDWERPMTSSGR 125
            EAR  RG+PK  ++ VD    +T +G+
Sbjct: 1020 EARPTRGRPKRNIASVDETPALTLNGK 1046


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,361
Number of Sequences: 5004
Number of extensions: 57143
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)