Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_A11
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    65   1e-11
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    31   0.18 
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    30   0.41 
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    28   1.3  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
 Frame = -3

Query: 622 FGGSXYQKVSDKLDCGVSMKWTAGS-ADTL-FGVGAKYALDQDASLHAKINNKSLIGLGY 449
           F  S Y +VS  ++ G ++ W A S A+ +   + +KYALD+D  +  KIN+  +  L Y
Sbjct: 187 FRASYYHRVSSDVEAGGNVTWDAASTANAITLELASKYALDKDTFVKGKINSAGVATLSY 246

Query: 448 QQKLRPGVTLTLSAAIDGQNFNAGGHKVGVAL 353
            Q +RPGVT+ L   +D Q      HK G++L
Sbjct: 247 FQTVRPGVTVGLGLQLDTQRLGQPAHKAGLSL 278


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
 Frame = -1

Query: 684 FAXGYQXGDLLSTQT*TMVKVSAVQXTRRYLTSWTAASA*SGRRVRPTHYSELERSTRWT 505
           F+  +   + LST +   V+ S+V  T  YLT    AS+      +   +S +E      
Sbjct: 204 FSSKHGFSNALSTASPIPVRTSSVSST--YLTQDREASS-KNCLSKALAFSSIEPPASSA 260

Query: 504 KTRLCTPRSTTSPSSVLVT-NRNYAQA*PLHCLLPSMDRTSMQVA-TRLALPSNSSPRKY 331
            T   +PR+T +PS+   + N N   +   +    +   T + +A ++ +LPSNS+P K 
Sbjct: 261 ST---SPRNTPTPSNNGTSINANVTSSLTSNSTGKTSKTTDLLIAASKKSLPSNSTPSKP 317

Query: 330 NQTY 319
           N ++
Sbjct: 318 NTSF 321


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 561 GRRVRPTHYSELERSTRWTKTRLCTPRSTTSP 466
           G  V+PT  SE+++ T W K  L  P ST+SP
Sbjct: 45  GLLVKPTMLSEVQKPTLWEK--LTKPASTSSP 74


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -2

Query: 455 WLPTETTPRRNPYIVCCHRWTELQCRWPQGWRCPRTRALENITKPTLVDKYILLSQPNS 279
           W    T PR       C + T+++ + PQ    P T  L    K   +D +  L  PNS
Sbjct: 145 WEGNLTNPRSEQPHTPCKKGTKIKLKPPQSPLSPTTSLLARKCKHIDLDTFSRLDHPNS 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,545
Number of Sequences: 5004
Number of extensions: 59755
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)