Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_A09
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    39   7e-04
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    26   6.6  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    25   8.7  

>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 725 LQKYFVRSVNNSGDVEARSSMHLAATMAGVGIGNAGVHLCHGLAYPIAG 579
           + KY  R+V+N  D EAR +M  A  + G+   NA +   H +A+ + G
Sbjct: 266 VNKYLKRAVDNGKDEEARDNMAYAEFLGGMAFNNASLGYVHAMAHQLGG 314


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +3

Query: 306 MSSLVYPNAFNPFSI-FNLSIYKSMTSES--ILPASFLLALVTSAP 434
           MSS+   N+FNPF + F+L  Y  +      +L   F+ A+++  P
Sbjct: 1   MSSVETRNSFNPFRVLFDLGSYGWLHPSRLLLLEIPFVFAIISKVP 46


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 246 SLERFLIN-DPEVK-HPWTKSGMSSLVYPNAFNP 341
           +L   LIN D  +K H W K   + L+ PN F P
Sbjct: 165 ALANLLINNDSNIKLHLWEKLQKADLLNPNRFRP 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,057
Number of Sequences: 5004
Number of extensions: 49424
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)