Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_A09
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0023 + 146841-147002,147962-148036,148181-148234,148284-14...    29   3.0  
05_01_0435 - 3453312-3453527,3455227-3455360,3455544-3455738,345...    29   3.9  
03_02_0147 - 5923117-5923215,5923882-5924069,5924885-5924977,592...    29   5.2  
06_03_0052 - 16027570-16027617,16027789-16027795,16028103-160283...    28   6.9  
03_01_0648 - 4749150-4749275,4749902-4749986,4750761-4750861,475...    28   6.9  
01_01_0968 - 7618357-7618529,7618891-7619094,7620896-7621139,762...    28   9.1  

>02_01_0023 +
           146841-147002,147962-148036,148181-148234,148284-148388,
           148736-148836,148937-148992,149284-149324,149427-149527,
           149629-149724,149905-149969,150048-150119,150537-150772,
           150874-150904,151020-151165,151264-151365,151469-151513,
           151614-151780,151812-152214
          Length = 685

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 432 PSRLAASRCFSGVTRCGESENSRRC 506
           P ++  S CFSG+ RC   E SR C
Sbjct: 402 PEKIDLS-CFSGILRCDADEKSRNC 425


>05_01_0435 -
           3453312-3453527,3455227-3455360,3455544-3455738,
           3455774-3455929,3456300-3456327,3456374-3456637,
           3456728-3456868,3457482-3457602,3457886-3458049
          Length = 472

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 339 PFSIF-NLSIYKSMTSESILPASFLLALVTSAPSRLAASRCFSGVTRCGESENSRRCHYN 515
           P  +F  + I K   + S+   + L+ + T    + A S C   +   GE ++S+     
Sbjct: 224 PIILFLKIMILKLGFTGSLTVPNVLVGMQTLPVEKKAGSSCSPAMNSKGEEDSSKLEEPK 283

Query: 516 RQAVRDYRIGTIVLGN 563
                +YRIG++++ N
Sbjct: 284 ASKTPEYRIGSLIVPN 299


>03_02_0147 -
           5923117-5923215,5923882-5924069,5924885-5924977,
           5925499-5925628,5925720-5925802,5925893-5925976,
           5926253-5926316,5926375-5926515,5926801-5926863,
           5926968-5927006,5927126-5927185,5927567-5927624,
           5927708-5928099
          Length = 497

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 698 NNSGDVEARS-SMHLAATMAGVGIGNAGVHLCHGLA 594
           NN+ D+ A+  S    ATM G+G+G    H+  G A
Sbjct: 320 NNAADISAKEGSQETLATMLGMGLGMLLAHVTRGHA 355


>06_03_0052 -
           16027570-16027617,16027789-16027795,16028103-16028341,
           16028432-16028566,16028670-16028888
          Length = 215

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 638 VGIGNAGVHLCHGLAYPIAGNVKSFVPEDYGSNPIIPHGLSVVMTAPAVF 489
           VG  + G  +    A   AGN+K F+P D+G++    H   +V  A A F
Sbjct: 96  VGYHDVGEQMKIIAAIKEAGNIKRFIPSDFGNDADHAH---IVEPAKATF 142


>03_01_0648 -
           4749150-4749275,4749902-4749986,4750761-4750861,
           4750933-4751191,4751382-4751434,4752828-4752990,
           4753181-4754616
          Length = 740

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 641 GVGIGNAGVHLCHGLAYPIAGNVKSFVPEDYGSNPIIP 528
           G G G  G   C+GL  P   +  +  P  YG +P  P
Sbjct: 39  GGGGGGGGAAQCYGLHGPTRYHAHAGAPARYGGDPCFP 76


>01_01_0968 -
           7618357-7618529,7618891-7619094,7620896-7621139,
           7623008-7623151,7623272-7623487
          Length = 326

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
 Frame = -2

Query: 689 GDVEARSSMHLAATMAGV---GIGNAGVHLCHGL-----AYPIAGNVKSFVPEDYG 546
           GD+  R S+  A   A V    +G+ G     G      A   AGNVK FVP +YG
Sbjct: 73  GDMNDRESLVAAIRQADVVISAVGHRGTVELDGQLKVVEAIKEAGNVKRFVPSEYG 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,299,438
Number of Sequences: 37544
Number of extensions: 306974
Number of successful extensions: 839
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)