Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_A09
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032639-7|CAA21631.2| 465|Caenorhabditis elegans Hypothetical ... 98 5e-21
Z92793-2|CAD56589.1| 684|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z92793-1|CAB07229.1| 681|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z72503-11|CAD56560.1| 684|Caenorhabditis elegans Hypothetical p... 30 2.0
Z72503-10|CAA96601.1| 681|Caenorhabditis elegans Hypothetical p... 30 2.0
U97193-4|AAB52439.1| 691|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z75550-2|CAA99928.2| 421|Caenorhabditis elegans Hypothetical pr... 28 8.1
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei... 28 8.1
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot... 28 8.1
>AL032639-7|CAA21631.2| 465|Caenorhabditis elegans Hypothetical
protein Y38F1A.6 protein.
Length = 465
Score = 98.3 bits (234), Expect = 5e-21
Identities = 48/90 (53%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Frame = -2
Query: 731 RPLQKYFVRSVNNSGDVEARSSMHLAATMAGVGIGNAGVHLCHGLAYPIAGNVKSFVPED 552
R + KYF RS+ + D EAR+ M A++ AG+G GNAGVHLCHGL+YPI+ KS V +D
Sbjct: 285 RIIGKYFRRSIFDPTDEEARTEMLKASSFAGIGFGNAGVHLCHGLSYPISSQAKSCVADD 344
Query: 551 YGSNP-IIPHGLSVVMTAPAVFRFTASSDP 465
Y +IPHGLSV+ TA A F FT ++ P
Sbjct: 345 YPKEKNLIPHGLSVMTTAVADFEFTTAACP 374
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = -3
Query: 466 PEKHLEAASLLGADV-TNAKRKDAGRILSDVILLYMDKLKIENGLKALGYTNDDIPDLVQ 290
P++HL +A LGAD+ NA + R L D + YM + NGLK +G+ DI L +
Sbjct: 374 PDRHLISAQTLGADIPNNASNEYISRTLCDRLRGYMRDFGVPNGLKGMGFEFSDIEMLTE 433
>Z92793-2|CAD56589.1| 684|Caenorhabditis elegans Hypothetical
protein C26C6.5b protein.
Length = 684
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 334 KALGYTNDDIPDLVQGCFTSGSFIKNRSSDT-XLKRIYQ 221
KA+G T DD+ + C S KNR+ T LKR +Q
Sbjct: 455 KAIGSTQDDLHLYCENCVRSAQKRKNRTDQTALLKRAFQ 493
>Z92793-1|CAB07229.1| 681|Caenorhabditis elegans Hypothetical
protein C26C6.5a protein.
Length = 681
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 334 KALGYTNDDIPDLVQGCFTSGSFIKNRSSDT-XLKRIYQ 221
KA+G T DD+ + C S KNR+ T LKR +Q
Sbjct: 455 KAIGSTQDDLHLYCENCVRSAQKRKNRTDQTALLKRAFQ 493
>Z72503-11|CAD56560.1| 684|Caenorhabditis elegans Hypothetical
protein C26C6.5b protein.
Length = 684
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 334 KALGYTNDDIPDLVQGCFTSGSFIKNRSSDT-XLKRIYQ 221
KA+G T DD+ + C S KNR+ T LKR +Q
Sbjct: 455 KAIGSTQDDLHLYCENCVRSAQKRKNRTDQTALLKRAFQ 493
>Z72503-10|CAA96601.1| 681|Caenorhabditis elegans Hypothetical
protein C26C6.5a protein.
Length = 681
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 334 KALGYTNDDIPDLVQGCFTSGSFIKNRSSDT-XLKRIYQ 221
KA+G T DD+ + C S KNR+ T LKR +Q
Sbjct: 455 KAIGSTQDDLHLYCENCVRSAQKRKNRTDQTALLKRAFQ 493
>U97193-4|AAB52439.1| 691|Caenorhabditis elegans Hypothetical
protein C06A5.6 protein.
Length = 691
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -3
Query: 409 RKDAGRILSDVIL-LYMDKLKIENGLKALGYTNDDIPD-LVQGC 284
RKD G L+ I Y DK+K ++G+ AL Y DD D L+ C
Sbjct: 223 RKDFGADLNGQINEFYKDKVKRKSGVHALIYKKDDRGDKLIFDC 266
>Z75550-2|CAA99928.2| 421|Caenorhabditis elegans Hypothetical
protein T22C1.3 protein.
Length = 421
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 330 AFNPFSIFNLSIYKSMTSESILPASFLLALVTSAPS 437
AFNP +I + I ++ + A LL+LVT P+
Sbjct: 144 AFNPITIVSTGILSLTVIQNFVSAVILLSLVTDRPT 179
>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
protein.
Length = 1908
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 264 INDPEVKHPWTKSGMSSLVYPNAF-NPFSIFNL 359
INDPEV H W + + + N NP +F++
Sbjct: 1753 INDPEVVHAWKSNALPLRFWVNLIKNPHFLFDI 1785
>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A protein.
Length = 1951
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 264 INDPEVKHPWTKSGMSSLVYPNAF-NPFSIFNL 359
INDPEV H W + + + N NP +F++
Sbjct: 1759 INDPEVVHAWKSNALPLRFWVNLIKNPHFLFDI 1791
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,227,884
Number of Sequences: 27780
Number of extensions: 268454
Number of successful extensions: 653
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -