Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_A08
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    36   0.010
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.024
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.30 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   1.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.6  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   2.1  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    28   2.1  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    28   2.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.8  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   4.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -3

Query: 450 PPPPPPPHPXXXXXXXPPPPPXG 382
           PPPPPPP         PPPPP G
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 32.7 bits (71), Expect = 0.074
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -1

Query: 449 PPPPPPPTXXXXXFXXXPPPPXG 381
           PPPPPPP          PPPP G
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 31.1 bits (67), Expect = 0.23
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 448 PPPPPPPPXXXXXXXXXPPPPRXV 377
           PPPPPPP          PPPP  V
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYV 33



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -1

Query: 446 PPPPPPTXXXXXFXXXPPPPXGG 378
           PPPPPP          PPPP  G
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPG 31


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -2

Query: 448 PPPPPPPPXXXXXXXXXPPPP 386
           PPPPPPPP         PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 33.5 bits (73), Expect = 0.042
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = -3

Query: 450 PPPPPPPHPXXXXXXXPPPPP 388
           PPPPPPP P       PPPPP
Sbjct: 761 PPPPPPP-PGVAGAGPPPPPP 780



 Score = 33.5 bits (73), Expect = 0.042
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -3

Query: 450 PPPPPPPHPXXXXXXXPPPPP 388
           PPPPPPP         PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 31.1 bits (67), Expect = 0.23
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 448 PPPPPPPPXXXXXXXXXPPPPRXV 377
           PPPPPPP          PPPP  V
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAV 785



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
 Frame = -3

Query: 450 PPPPPP----PHPXXXXXXXPPPPPXGXXXXPXXXRXGXGVXXXXXXXAPPP 307
           PPPPPP    P P       PPP P      P     G           PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -1

Query: 449 PPPPPPPTXXXXXFXXXPPPPXGGXXXXPPP 357
           PPPPPPP          P PP G     PPP
Sbjct: 337 PPPPPPPRSNAA--GSIPLPPQGRSAPPPPP 365



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 9/30 (30%)
 Frame = -3

Query: 450 PPPPPPPH---------PXXXXXXXPPPPP 388
           PPPPPPP          P       PPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/54 (29%), Positives = 18/54 (33%), Gaps = 6/54 (11%)
 Frame = -1

Query: 449 PPPPPPPTXXXXXFXXX------PPPPXGGXXXXPPPXGGXGXFFFIFXXPPPP 306
           PP PPP +               PPPP        PP G       +   PPPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -3

Query: 447 PPPPPPHPXXXXXXXPPP 394
           PPPPPP         PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -2

Query: 442 PPPPPPXXXXXXXXXPPP 389
           PPPPPP         PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/55 (32%), Positives = 18/55 (32%)
 Frame = -1

Query: 449 PPPPPPPTXXXXXFXXXPPPPXGGXXXXPPPXGGXGXFFFIFXXPPPPXFFXPPP 285
           PPPPPPPT          PP        P P             PPPP     PP
Sbjct: 238 PPPPPPPTL---------PPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPP 283



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 448 PPPPPPPP 425
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 448 PPPPPPPP 425
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -1

Query: 446  PPPPPPTXXXXXFXXXPPPPXGGXXXXPPP 357
            P PPPP          PP P G     PPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 450  PPPPPPPHPXXXXXXXPPPPP 388
            PPP  PP P       PPP P
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLP 1736


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 448 PPPPPPPPXXXXXXXXXPPPP 386
           PPPPPPPP          P P
Sbjct: 307 PPPPPPPPSNDFWKDSNEPAP 327



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 448 PPPPPPPP 425
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 450 PPPPPPPHP 424
           PPPPPPP P
Sbjct: 306 PPPPPPPPP 314


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 447 PPPPPPHPXXXXXXXPPPPP 388
           P PP P P       PPPPP
Sbjct: 729 PAPPTPAPTPAVKHHPPPPP 748


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
 Frame = -1

Query: 443  PPPPPTXXXXXFXXX---PPPPXGGXXXXPPPXGG 348
            PPPPPT            PPPP  G    PP   G
Sbjct: 908  PPPPPTASMTASAPAIASPPPPKVGETYHPPTASG 942


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 448  PPPPPPPP 425
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 448 PPPPPPPP 425
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 448 PPPPPPPP 425
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 448 PPPPPPPP 425
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,423,898
Number of Sequences: 5004
Number of extensions: 22792
Number of successful extensions: 395
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)