Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_A05
(779 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC068536-1|AAH68536.1| 345|Homo sapiens KHDRBS3 protein protein. 68 3e-11
BC032606-1|AAH32606.1| 346|Homo sapiens KH domain containing, R... 68 3e-11
AF069681-1|AAC24857.1| 346|Homo sapiens T-Star protein. 68 3e-11
AF051322-1|AAC99295.1| 264|Homo sapiens Sam68-like phosphotyros... 68 3e-11
AF051321-1|AAC99294.1| 346|Homo sapiens Sam68-like phosphotyros... 68 3e-11
Z93021-1|CAI21649.1| 349|Homo sapiens KH domain containing, RNA... 64 7e-10
BC034043-1|AAH34043.1| 349|Homo sapiens KH domain containing, R... 64 7e-10
AY077838-1|AAL77219.1| 349|Homo sapiens Sam68-like mammalian pr... 64 7e-10
AL391644-1|CAI15262.1| 349|Homo sapiens KH domain containing, R... 64 7e-10
AL360220-1|CAH70882.1| 349|Homo sapiens KH domain containing, R... 64 7e-10
AL355347-1|CAI14907.1| 349|Homo sapiens KH domain containing, R... 64 7e-10
AL138882-1|CAI19748.1| 349|Homo sapiens KH domain containing, R... 64 7e-10
AL049544-1|CAI19918.1| 349|Homo sapiens KH domain containing, R... 64 7e-10
U78971-1|AAB47504.1| 404|Homo sapiens Sam68deltaKH protein. 55 3e-07
M88108-1|AAA59990.1| 443|Homo sapiens p62 protein. 55 3e-07
BC019109-1|AAH19109.1| 443|Homo sapiens KH domain containing, R... 55 3e-07
BC010132-1|AAH10132.1| 381|Homo sapiens KHDRBS1 protein protein. 55 3e-07
BC000717-1|AAH00717.1| 443|Homo sapiens KH domain containing, R... 55 3e-07
AL445248-2|CAH71945.1| 443|Homo sapiens KH domain containing, R... 55 3e-07
AL445248-1|CAH71944.1| 404|Homo sapiens KH domain containing, R... 55 3e-07
AL139249-2|CAI21972.1| 443|Homo sapiens KH domain containing, R... 55 3e-07
AL139249-1|CAI21971.1| 404|Homo sapiens KH domain containing, R... 55 3e-07
AK091346-1|BAC03643.1| 418|Homo sapiens protein ( Homo sapiens ... 55 3e-07
DQ351905-1|ABC73063.1| 595|Homo sapiens heterogeneous nuclear r... 32 2.0
BX640912-1|CAE45953.1| 613|Homo sapiens hypothetical protein pr... 32 2.0
BX538163-1|CAD98043.1| 243|Homo sapiens hypothetical protein pr... 32 2.0
BC110389-1|AAI10390.1| 607|Homo sapiens HNRPR protein protein. 32 2.0
BC001449-1|AAH01449.1| 636|Homo sapiens HNRPR protein protein. 32 2.0
AL109936-4|CAI19027.1| 636|Homo sapiens heterogeneous nuclear r... 32 2.0
AL109936-3|CAI19026.1| 633|Homo sapiens heterogeneous nuclear r... 32 2.0
AF000364-1|AAC39540.1| 633|Homo sapiens heterogeneous nuclear r... 32 2.0
DQ323998-1|ABC88600.1| 333|Homo sapiens QKI protein. 30 8.1
BC019917-1|AAH19917.1| 341|Homo sapiens quaking homolog, KH dom... 30 8.1
BC012222-1|AAH12222.1| 293|Homo sapiens QKI protein protein. 30 8.1
AY780788-1|AAV98358.1| 313|Homo sapiens quaking isoform protein. 30 8.1
AL356119-3|CAI23024.1| 325|Homo sapiens quaking homolog, KH dom... 30 8.1
AL356119-2|CAI23023.1| 319|Homo sapiens quaking homolog, KH dom... 30 8.1
AL356119-1|CAI23022.1| 341|Homo sapiens quaking homolog, KH dom... 30 8.1
AL031781-3|CAI21653.1| 325|Homo sapiens quaking homolog, KH dom... 30 8.1
AL031781-2|CAI21652.1| 319|Homo sapiens quaking homolog, KH dom... 30 8.1
AL031781-1|CAI21651.1| 341|Homo sapiens quaking homolog, KH dom... 30 8.1
AK027309-1|BAB55032.1| 323|Homo sapiens protein ( Homo sapiens ... 30 8.1
AF142422-1|AAF63417.1| 341|Homo sapiens QUAKING isoform 3 protein. 30 8.1
AF142421-1|AAF63416.1| 337|Homo sapiens QUAKING isoform 5 protein. 30 8.1
AF142420-1|AAF63415.1| 315|Homo sapiens QUAKING isoform 4 protein. 30 8.1
AF142419-1|AAF63414.1| 363|Homo sapiens QUAKING isoform 6 protein. 30 8.1
AF142418-1|AAF63413.1| 347|Homo sapiens QUAKING isoform 2 protein. 30 8.1
AF142417-1|AAF63412.1| 321|Homo sapiens QUAKING isoform 1 protein. 30 8.1
AB067808-1|BAB69681.1| 325|Homo sapiens RNA binding protein HQK... 30 8.1
AB067801-1|BAB69499.1| 319|Homo sapiens RNA binding protein HQK... 30 8.1
AB067800-1|BAB69498.1| 325|Homo sapiens RNA binding protein HQK... 30 8.1
AB067799-1|BAB69497.1| 319|Homo sapiens RNA binding protein HQK... 30 8.1
AB067798-1|BAB69496.1| 341|Homo sapiens RNA binding protein HQK... 30 8.1
>BC068536-1|AAH68536.1| 345|Homo sapiens KHDRBS3 protein protein.
Length = 345
Score = 68.1 bits (159), Expect = 3e-11
Identities = 27/53 (50%), Positives = 40/53 (75%)
Frame = -1
Query: 776 KYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
KYFH DD HV I APPAEA+AR+ +AL E+KK+L+PD N+ + +Q++++
Sbjct: 118 KYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQEL 170
>BC032606-1|AAH32606.1| 346|Homo sapiens KH domain containing, RNA
binding, signal transduction associated 3 protein.
Length = 346
Score = 68.1 bits (159), Expect = 3e-11
Identities = 27/53 (50%), Positives = 40/53 (75%)
Frame = -1
Query: 776 KYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
KYFH DD HV I APPAEA+AR+ +AL E+KK+L+PD N+ + +Q++++
Sbjct: 119 KYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQEL 171
>AF069681-1|AAC24857.1| 346|Homo sapiens T-Star protein.
Length = 346
Score = 68.1 bits (159), Expect = 3e-11
Identities = 27/53 (50%), Positives = 40/53 (75%)
Frame = -1
Query: 776 KYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
KYFH DD HV I APPAEA+AR+ +AL E+KK+L+PD N+ + +Q++++
Sbjct: 119 KYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQEL 171
>AF051322-1|AAC99295.1| 264|Homo sapiens Sam68-like phosphotyrosine
protein beta protein.
Length = 264
Score = 68.1 bits (159), Expect = 3e-11
Identities = 27/53 (50%), Positives = 40/53 (75%)
Frame = -1
Query: 776 KYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
KYFH DD HV I APPAEA+AR+ +AL E+KK+L+PD N+ + +Q++++
Sbjct: 112 KYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQEL 164
>AF051321-1|AAC99294.1| 346|Homo sapiens Sam68-like phosphotyrosine
protein alpha protein.
Length = 346
Score = 68.1 bits (159), Expect = 3e-11
Identities = 27/53 (50%), Positives = 40/53 (75%)
Frame = -1
Query: 776 KYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
KYFH DD HV I APPAEA+AR+ +AL E+KK+L+PD N+ + +Q++++
Sbjct: 119 KYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQEL 171
>Z93021-1|CAI21649.1| 349|Homo sapiens KH domain containing, RNA
binding, signal transduction associated 2 protein.
Length = 349
Score = 63.7 bits (148), Expect = 7e-10
Identities = 25/53 (47%), Positives = 39/53 (73%)
Frame = -1
Query: 776 KYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
KY H +D+ HV I APP EA++R+++AL E+KK+LVPD N+ + Q+R++
Sbjct: 123 KYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLREL 175
>BC034043-1|AAH34043.1| 349|Homo sapiens KH domain containing, RNA
binding, signal transduction associated 2 protein.
Length = 349
Score = 63.7 bits (148), Expect = 7e-10
Identities = 25/53 (47%), Positives = 39/53 (73%)
Frame = -1
Query: 776 KYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
KY H +D+ HV I APP EA++R+++AL E+KK+LVPD N+ + Q+R++
Sbjct: 123 KYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLREL 175
>AY077838-1|AAL77219.1| 349|Homo sapiens Sam68-like mammalian
protein 1 protein.
Length = 349
Score = 63.7 bits (148), Expect = 7e-10
Identities = 25/53 (47%), Positives = 39/53 (73%)
Frame = -1
Query: 776 KYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
KY H +D+ HV I APP EA++R+++AL E+KK+LVPD N+ + Q+R++
Sbjct: 123 KYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLREL 175
>AL391644-1|CAI15262.1| 349|Homo sapiens KH domain containing, RNA
binding, signal transduction associated 2 protein.
Length = 349
Score = 63.7 bits (148), Expect = 7e-10
Identities = 25/53 (47%), Positives = 39/53 (73%)
Frame = -1
Query: 776 KYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
KY H +D+ HV I APP EA++R+++AL E+KK+LVPD N+ + Q+R++
Sbjct: 123 KYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLREL 175
>AL360220-1|CAH70882.1| 349|Homo sapiens KH domain containing, RNA
binding, signal transduction associated 2 protein.
Length = 349
Score = 63.7 bits (148), Expect = 7e-10
Identities = 25/53 (47%), Positives = 39/53 (73%)
Frame = -1
Query: 776 KYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
KY H +D+ HV I APP EA++R+++AL E+KK+LVPD N+ + Q+R++
Sbjct: 123 KYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLREL 175
>AL355347-1|CAI14907.1| 349|Homo sapiens KH domain containing, RNA
binding, signal transduction associated 2 protein.
Length = 349
Score = 63.7 bits (148), Expect = 7e-10
Identities = 25/53 (47%), Positives = 39/53 (73%)
Frame = -1
Query: 776 KYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
KY H +D+ HV I APP EA++R+++AL E+KK+LVPD N+ + Q+R++
Sbjct: 123 KYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLREL 175
>AL138882-1|CAI19748.1| 349|Homo sapiens KH domain containing, RNA
binding, signal transduction associated 2 protein.
Length = 349
Score = 63.7 bits (148), Expect = 7e-10
Identities = 25/53 (47%), Positives = 39/53 (73%)
Frame = -1
Query: 776 KYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
KY H +D+ HV I APP EA++R+++AL E+KK+LVPD N+ + Q+R++
Sbjct: 123 KYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLREL 175
>AL049544-1|CAI19918.1| 349|Homo sapiens KH domain containing, RNA
binding, signal transduction associated 2 protein.
Length = 349
Score = 63.7 bits (148), Expect = 7e-10
Identities = 25/53 (47%), Positives = 39/53 (73%)
Frame = -1
Query: 776 KYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
KY H +D+ HV I APP EA++R+++AL E+KK+LVPD N+ + Q+R++
Sbjct: 123 KYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLREL 175
>U78971-1|AAB47504.1| 404|Homo sapiens Sam68deltaKH protein.
Length = 404
Score = 54.8 bits (126), Expect = 3e-07
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
PKY H D HV I PP EA+A +A+A+ EVKK+LVPD + + Q ++
Sbjct: 179 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLEL 232
>M88108-1|AAA59990.1| 443|Homo sapiens p62 protein.
Length = 443
Score = 54.8 bits (126), Expect = 3e-07
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
PKY H D HV I PP EA+A +A+A+ EVKK+LVPD + + Q ++
Sbjct: 218 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLEL 271
>BC019109-1|AAH19109.1| 443|Homo sapiens KH domain containing, RNA
binding, signal transduction associated 1 protein.
Length = 443
Score = 54.8 bits (126), Expect = 3e-07
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
PKY H D HV I PP EA+A +A+A+ EVKK+LVPD + + Q ++
Sbjct: 218 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLEL 271
>BC010132-1|AAH10132.1| 381|Homo sapiens KHDRBS1 protein protein.
Length = 381
Score = 54.8 bits (126), Expect = 3e-07
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
PKY H D HV I PP EA+A +A+A+ EVKK+LVPD + + Q ++
Sbjct: 218 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLEL 271
>BC000717-1|AAH00717.1| 443|Homo sapiens KH domain containing, RNA
binding, signal transduction associated 1 protein.
Length = 443
Score = 54.8 bits (126), Expect = 3e-07
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
PKY H D HV I PP EA+A +A+A+ EVKK+LVPD + + Q ++
Sbjct: 218 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLEL 271
>AL445248-2|CAH71945.1| 443|Homo sapiens KH domain containing, RNA
binding, signal transduction associated 1 protein.
Length = 443
Score = 54.8 bits (126), Expect = 3e-07
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
PKY H D HV I PP EA+A +A+A+ EVKK+LVPD + + Q ++
Sbjct: 218 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLEL 271
>AL445248-1|CAH71944.1| 404|Homo sapiens KH domain containing, RNA
binding, signal transduction associated 1 protein.
Length = 404
Score = 54.8 bits (126), Expect = 3e-07
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
PKY H D HV I PP EA+A +A+A+ EVKK+LVPD + + Q ++
Sbjct: 179 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLEL 232
>AL139249-2|CAI21972.1| 443|Homo sapiens KH domain containing, RNA
binding, signal transduction associated 1 protein.
Length = 443
Score = 54.8 bits (126), Expect = 3e-07
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
PKY H D HV I PP EA+A +A+A+ EVKK+LVPD + + Q ++
Sbjct: 218 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLEL 271
>AL139249-1|CAI21971.1| 404|Homo sapiens KH domain containing, RNA
binding, signal transduction associated 1 protein.
Length = 404
Score = 54.8 bits (126), Expect = 3e-07
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
PKY H D HV I PP EA+A +A+A+ EVKK+LVPD + + Q ++
Sbjct: 179 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLEL 232
>AK091346-1|BAC03643.1| 418|Homo sapiens protein ( Homo sapiens
cDNA FLJ34027 fis, clone FCBBF2003549, highly similar to
GAP-associated tyrosine phosphoprotein p62 (Sam68). ).
Length = 418
Score = 54.8 bits (126), Expect = 3e-07
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMRDI 618
PKY H D HV I PP EA+A +A+A+ EVKK+LVPD + + Q ++
Sbjct: 193 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLEL 246
>DQ351905-1|ABC73063.1| 595|Homo sapiens heterogeneous nuclear
ribonucleoprotein-R2 protein.
Length = 595
Score = 32.3 bits (70), Expect = 2.0
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Frame = -1
Query: 500 ERARTAMEGSYSYEDHYAPPEPPM--------RGGGRA--AEPDVYYERGHERFYEDEAH 351
+ AR A S +YED+Y P P M RGGGR P YY G+E +Y+D +
Sbjct: 382 QAARQASR-STAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY--GYEDYYDD--Y 436
Query: 350 YREEPREYKASSRD 309
Y + +Y+ D
Sbjct: 437 YGYDYHDYRGGYED 450
>BX640912-1|CAE45953.1| 613|Homo sapiens hypothetical protein
protein.
Length = 613
Score = 32.3 bits (70), Expect = 2.0
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Frame = -1
Query: 500 ERARTAMEGSYSYEDHYAPPEPPM--------RGGGRA--AEPDVYYERGHERFYEDEAH 351
+ AR A S +YED+Y P P M RGGGR P YY G+E +Y+D +
Sbjct: 400 QAARQASR-STAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY--GYEDYYDD--Y 454
Query: 350 YREEPREYKASSRD 309
Y + +Y+ D
Sbjct: 455 YGYDYHDYRGGYED 468
>BX538163-1|CAD98043.1| 243|Homo sapiens hypothetical protein
protein.
Length = 243
Score = 32.3 bits (70), Expect = 2.0
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Frame = -1
Query: 500 ERARTAMEGSYSYEDHYAPPEPPM--------RGGGRA--AEPDVYYERGHERFYEDEAH 351
+ AR A S +YED+Y P P M RGGGR P YY G+E +Y+D +
Sbjct: 30 QAARQASR-STAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY--GYEDYYDD--Y 84
Query: 350 YREEPREYKASSRD 309
Y + +Y+ D
Sbjct: 85 YGYDYHDYRGGYED 98
>BC110389-1|AAI10390.1| 607|Homo sapiens HNRPR protein protein.
Length = 607
Score = 32.3 bits (70), Expect = 2.0
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Frame = -1
Query: 500 ERARTAMEGSYSYEDHYAPPEPPM--------RGGGRA--AEPDVYYERGHERFYEDEAH 351
+ AR A S +YED+Y P P M RGGGR P YY G+E +Y+D +
Sbjct: 394 QAARQASR-STAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY--GYEDYYDD--Y 448
Query: 350 YREEPREYKASSRD 309
Y + +Y+ D
Sbjct: 449 YGYDYHDYRGGYED 462
>BC001449-1|AAH01449.1| 636|Homo sapiens HNRPR protein protein.
Length = 636
Score = 32.3 bits (70), Expect = 2.0
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Frame = -1
Query: 500 ERARTAMEGSYSYEDHYAPPEPPM--------RGGGRA--AEPDVYYERGHERFYEDEAH 351
+ AR A S +YED+Y P P M RGGGR P YY G+E +Y+D +
Sbjct: 423 QAARQASR-STAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY--GYEDYYDD--Y 477
Query: 350 YREEPREYKASSRD 309
Y + +Y+ D
Sbjct: 478 YGYDYHDYRGGYED 491
>AL109936-4|CAI19027.1| 636|Homo sapiens heterogeneous nuclear
ribonucleoprotein R protein.
Length = 636
Score = 32.3 bits (70), Expect = 2.0
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Frame = -1
Query: 500 ERARTAMEGSYSYEDHYAPPEPPM--------RGGGRA--AEPDVYYERGHERFYEDEAH 351
+ AR A S +YED+Y P P M RGGGR P YY G+E +Y+D +
Sbjct: 423 QAARQASR-STAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY--GYEDYYDD--Y 477
Query: 350 YREEPREYKASSRD 309
Y + +Y+ D
Sbjct: 478 YGYDYHDYRGGYED 491
>AL109936-3|CAI19026.1| 633|Homo sapiens heterogeneous nuclear
ribonucleoprotein R protein.
Length = 633
Score = 32.3 bits (70), Expect = 2.0
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Frame = -1
Query: 500 ERARTAMEGSYSYEDHYAPPEPPM--------RGGGRA--AEPDVYYERGHERFYEDEAH 351
+ AR A S +YED+Y P P M RGGGR P YY G+E +Y+D +
Sbjct: 420 QAARQASR-STAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY--GYEDYYDD--Y 474
Query: 350 YREEPREYKASSRD 309
Y + +Y+ D
Sbjct: 475 YGYDYHDYRGGYED 488
>AF000364-1|AAC39540.1| 633|Homo sapiens heterogeneous nuclear
ribonucleoprotein R protein.
Length = 633
Score = 32.3 bits (70), Expect = 2.0
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Frame = -1
Query: 500 ERARTAMEGSYSYEDHYAPPEPPM--------RGGGRA--AEPDVYYERGHERFYEDEAH 351
+ AR A S +YED+Y P P M RGGGR P YY G+E +Y+D +
Sbjct: 420 QAARQASR-STAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY--GYEDYYDD--Y 474
Query: 350 YREEPREYKASSRD 309
Y + +Y+ D
Sbjct: 475 YGYDYHDYRGGYED 488
>DQ323998-1|ABC88600.1| 333|Homo sapiens QKI protein.
Length = 333
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +D HV I+ A ++ A+ EVKK LVP
Sbjct: 142 PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 181
>BC019917-1|AAH19917.1| 341|Homo sapiens quaking homolog, KH domain
RNA binding (mouse) protein.
Length = 341
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +D HV I+ A ++ A+ EVKK LVP
Sbjct: 142 PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 181
>BC012222-1|AAH12222.1| 293|Homo sapiens QKI protein protein.
Length = 293
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +D HV I+ A ++ A+ EVKK LVP
Sbjct: 94 PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 133
>AY780788-1|AAV98358.1| 313|Homo sapiens quaking isoform protein.
Length = 313
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +D HV I+ A ++ A+ EVKK LVP
Sbjct: 138 PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 177
>AL356119-3|CAI23024.1| 325|Homo sapiens quaking homolog, KH domain
RNA binding (mouse) protein.
Length = 325
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +D HV I+ A ++ A+ EVKK LVP
Sbjct: 142 PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 181
>AL356119-2|CAI23023.1| 319|Homo sapiens quaking homolog, KH domain
RNA binding (mouse) protein.
Length = 319
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +D HV I+ A ++ A+ EVKK LVP
Sbjct: 142 PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 181
>AL356119-1|CAI23022.1| 341|Homo sapiens quaking homolog, KH domain
RNA binding (mouse) protein.
Length = 341
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +D HV I+ A ++ A+ EVKK LVP
Sbjct: 142 PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 181
>AL031781-3|CAI21653.1| 325|Homo sapiens quaking homolog, KH domain
RNA binding (mouse) protein.
Length = 325
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +D HV I+ A ++ A+ EVKK LVP
Sbjct: 142 PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 181
>AL031781-2|CAI21652.1| 319|Homo sapiens quaking homolog, KH domain
RNA binding (mouse) protein.
Length = 319
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +D HV I+ A ++ A+ EVKK LVP
Sbjct: 142 PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 181
>AL031781-1|CAI21651.1| 341|Homo sapiens quaking homolog, KH domain
RNA binding (mouse) protein.
Length = 341
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +D HV I+ A ++ A+ EVKK LVP
Sbjct: 142 PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 181
>AK027309-1|BAB55032.1| 323|Homo sapiens protein ( Homo sapiens
cDNA FLJ14403 fis, clone HEMBA1003805, highly similar to
Mus musculus KH domain RNA binding protein QKI-5A mRNA.
).
Length = 323
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +D HV I+ A ++ A+ EVKK LVP
Sbjct: 124 PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 163
>AF142422-1|AAF63417.1| 341|Homo sapiens QUAKING isoform 3 protein.
Length = 341
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +D HV I+ A ++ A+ EVKK LVP
Sbjct: 164 PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 203
>AF142421-1|AAF63416.1| 337|Homo sapiens QUAKING isoform 5 protein.
Length = 337
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +D HV I+ A ++ A+ EVKK LVP
Sbjct: 138 PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 177
>AF142420-1|AAF63415.1| 315|Homo sapiens QUAKING isoform 4 protein.
Length = 315
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +D HV I+ A ++ A+ EVKK LVP
Sbjct: 138 PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 177
>AF142419-1|AAF63414.1| 363|Homo sapiens QUAKING isoform 6 protein.
Length = 363
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +D HV I+ A ++ A+ EVKK LVP
Sbjct: 164 PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 203
>AF142418-1|AAF63413.1| 347|Homo sapiens QUAKING isoform 2 protein.
Length = 347
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +D HV I+ A ++ A+ EVKK LVP
Sbjct: 164 PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 203
>AF142417-1|AAF63412.1| 321|Homo sapiens QUAKING isoform 1 protein.
Length = 321
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +D HV I+ A ++ A+ EVKK LVP
Sbjct: 138 PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 177
>AB067808-1|BAB69681.1| 325|Homo sapiens RNA binding protein HQK
protein.
Length = 325
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +D HV I+ A ++ A+ EVKK LVP
Sbjct: 142 PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 181
>AB067801-1|BAB69499.1| 319|Homo sapiens RNA binding protein HQK-7B
protein.
Length = 319
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +D HV I+ A ++ A+ EVKK LVP
Sbjct: 142 PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 181
>AB067800-1|BAB69498.1| 325|Homo sapiens RNA binding protein HQK-7
protein.
Length = 325
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +D HV I+ A ++ A+ EVKK LVP
Sbjct: 142 PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 181
>AB067799-1|BAB69497.1| 319|Homo sapiens RNA binding protein HQK-6
protein.
Length = 319
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +D HV I+ A ++ A+ EVKK LVP
Sbjct: 142 PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 181
>AB067798-1|BAB69496.1| 341|Homo sapiens RNA binding protein HQK-5
protein.
Length = 341
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +D HV I+ A ++ A+ EVKK LVP
Sbjct: 142 PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 181
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,680,367
Number of Sequences: 237096
Number of extensions: 1226869
Number of successful extensions: 3730
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 3634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3726
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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