Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_A05
(779 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021492-12|CAJ76949.1| 622|Caenorhabditis elegans Hypothetical... 34 0.099
AL021492-11|CAA16378.1| 684|Caenorhabditis elegans Hypothetical... 34 0.099
AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical ... 33 0.17
AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical ... 33 0.17
Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical pr... 30 1.6
U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein. 30 1.6
AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna bin... 28 6.5
AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna bin... 28 6.5
AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna bin... 28 6.5
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 28 8.6
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 28 8.6
>AL021492-12|CAJ76949.1| 622|Caenorhabditis elegans Hypothetical
protein Y45F10D.3b protein.
Length = 622
Score = 34.3 bits (75), Expect = 0.099
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 449 APPEPPMRGGGRAAEPDVYYERGHERF-YEDEAHYREEPR 333
A P PP G A +P Y RGHE+ +EDEA Y +E R
Sbjct: 55 ANPNPPAALGDEALDPFEKY-RGHEKIKWEDEAAYEKEKR 93
>AL021492-11|CAA16378.1| 684|Caenorhabditis elegans Hypothetical
protein Y45F10D.3a protein.
Length = 684
Score = 34.3 bits (75), Expect = 0.099
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 449 APPEPPMRGGGRAAEPDVYYERGHERF-YEDEAHYREEPR 333
A P PP G A +P Y RGHE+ +EDEA Y +E R
Sbjct: 117 ANPNPPAALGDEALDPFEKY-RGHEKIKWEDEAAYEKEKR 155
>AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical
protein E02D9.1b protein.
Length = 315
Score = 33.5 bits (73), Expect = 0.17
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNET 645
P++ H + HV++ +AP A+ R+A + E+ + L P +T
Sbjct: 191 PQHAHFSGPLHVKVETVAPAYIAYGRVAAVIEELSRILQPIHEDT 235
>AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical
protein E02D9.1c protein.
Length = 317
Score = 33.5 bits (73), Expect = 0.17
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNET 645
P++ H + HV++ +AP A+ R+A + E+ + L P +T
Sbjct: 191 PQHAHFSGPLHVKVETVAPAYIAYGRVAAVIEELSRILQPIHEDT 235
>Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical
protein T23G11.3 protein.
Length = 463
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 767 HXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
H DD HV + H ++ AL +VKK L+P
Sbjct: 269 HLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIP 304
>U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein.
Length = 463
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 767 HXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
H DD HV + H ++ AL +VKK L+P
Sbjct: 269 HLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIP 304
>AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform a protein.
Length = 328
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +++ HV I A ++ A+ EV+K LVP
Sbjct: 148 PNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLLVP 187
>AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform c protein.
Length = 445
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +++ HV I A ++ A+ EV+K LVP
Sbjct: 190 PNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLLVP 229
>AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform b protein.
Length = 403
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 779 PKYFHXADDFHVEISAIAPPAEAHARIAYALAEVKKYLVP 660
P + H +++ HV I A ++ A+ EV+K LVP
Sbjct: 148 PNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLLVP 187
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 521 NKIISTLERARTAMEGSYSYEDHYAPPEPPMRGGGRAAE 405
N+ I +E R +E Y E+ +APPE GG A E
Sbjct: 149 NESIGNVEVNRV-LEVLYETEEGFAPPEDEANGGAEAEE 186
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 521 NKIISTLERARTAMEGSYSYEDHYAPPEPPMRGGGRAAE 405
N+ I +E R +E Y E+ +APPE GG A E
Sbjct: 278 NESIGNVEVNRV-LEVLYETEEGFAPPEDEANGGAEAEE 315
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,874,786
Number of Sequences: 27780
Number of extensions: 193620
Number of successful extensions: 635
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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