Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_A03
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.32 
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom...    27   3.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.9  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    26   5.2  
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    26   5.2  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   6.8  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 24/69 (34%), Positives = 32/69 (46%)
 Frame = +1

Query: 436  GGPRPALRLRCRPSRSTPQHTASALPRRAVDTPPPGR*ARPGEH*ADPVAYHTYSGPPAA 615
            GG  PA  +   P R  PQ  ++A P+ +  TPPP   + P    A P+     S PP  
Sbjct: 1679 GGMAPAHPVSTPPVR--PQ--SAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734

Query: 616  HDTTSAPHV 642
               +SAP V
Sbjct: 1735 LPASSAPSV 1743


>SPBC119.04 |mei3||meiosis inducing protein Mei3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 376 RRPAWCASEIPHRTAGASRSGGPR 447
           R PA  AS +P+RT  A RS  PR
Sbjct: 10  RHPASSASALPNRTNTARRSTSPR 33


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
 Frame = +1

Query: 442 PRPALRLRCRPSRSTPQHTASALPRRAVDTPPPGR*ARPGEH*ADPVAYHTYSGPPAAHD 621
           P P        + S+P  T S     +   PP G    P      P +  + S PP    
Sbjct: 262 PIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPAS 321

Query: 622 TTS-APHVTPITTTSLAHT 675
           T+S     +P+ +TS + T
Sbjct: 322 TSSTGTSSSPLPSTSTSCT 340



 Score = 26.2 bits (55), Expect = 5.2
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = +1

Query: 415 TAGASRSGGPRPALRLRCRPSRSTPQHTASALPRRAVDTPPPGR*ARPGEH*ADPVAYHT 594
           T+ +S S  P PA       S S+P  + S     +   PP G    P      P +  +
Sbjct: 308 TSTSSTSTPPPPASTSSTGTS-SSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSS 366

Query: 595 YSGPPAAHDTTS-APHVTPITTTSLAHT 675
            S PP    T+S     +P+ +TS + T
Sbjct: 367 TSTPPPPASTSSTGTSSSPLLSTSTSCT 394



 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = +1

Query: 406 PHRTAGASRSGGPRPALRLRCRPSRSTPQHTASALPRRAVDTPPP 540
           P  T+    +  P P     C  S S P   +S+L      T PP
Sbjct: 209 PTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPP 253


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 623 VSWAAGGPEYVWYATG-SAQCSPGRAHLPGG 534
           + W+A G EYV  +TG         AHL GG
Sbjct: 85  IKWSASGAEYVIESTGVFTTKETASAHLKGG 115


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 436 GGPRPALRLRCRPSRSTPQ 492
           G PRP    RC+P  STP+
Sbjct: 115 GRPRPDFLARCQPFESTPK 133


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
 Frame = +1

Query: 475 SRSTPQHTASALPRRAVDT------PPPGR*ARPGEH*ADPVAYHTYSGPPAAHDTTSAP 636
           S   PQ +A+A P+R+         PP G+ A P    A P A     G PA   T +  
Sbjct: 427 STVVPQESATATPKRSPSATPTSALPPIGKFAPPTTAKAQP-APEKRRGEPAV-QTRNHS 484

Query: 637 HVTPITTTSLAHTRPK 684
             T   T+S+  T P+
Sbjct: 485 KRTRTATSSVEETTPR 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,182,936
Number of Sequences: 5004
Number of extensions: 33682
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)