Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_P24
         (1031 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    29   1.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.5  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   3.3  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    27   4.3  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    27   4.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.5  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   10.0 
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    26   10.0 

>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 506 SSRRYRGRVSRLYTEQAPSLPPQQF 432
           + R  RG+V RLYTE+A SL  ++F
Sbjct: 354 AGRTMRGKVFRLYTEKAYSLMKEEF 378


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 540 SPTPPKRKFPLPSRNTSN--TQYTYQPYTVEKKVPYEVKVHVDKPYEVKVP 686
           +P+P + + PLPS  + N   +Y   P T    +P    +  D+P +V  P
Sbjct: 499 APSPKEEERPLPSEPSQNQPAEYRDTPDTPRNIMPLPGLMSADQPIKVTEP 549


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 540 SPTPPKRKFPLPSRNTSNT 596
           S  PP+ KF LP R TSNT
Sbjct: 449 SKQPPRFKFQLPPRPTSNT 467


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 215 NYVLHKIL--CHRCPFCLVSSLRLPSVCLSPPW 123
           N V H +L  C +     +SS ++P VC+SP W
Sbjct: 201 NPVSHAVLYDCSQETLKKISSAQVPIVCVSPKW 233


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 21/81 (25%), Positives = 31/81 (38%)
 Frame = +3

Query: 459 LFRIQSRNTSPIPSRRKYPMR*KCPYLSPTPPKRKFPLPSRNTSNTQYTYQPYTVEKKVP 638
           + ++++R  SP+   RK   R          PKR     S+N S    +  P  +E    
Sbjct: 481 VLQMENRAVSPVYDSRKNGSRSSFTLRKSRSPKRPSSSLSQNASRLPRSLTPGNLEPN-- 538

Query: 639 YEVKVHVDKPYEVKVPVDRPY 701
           Y+  V VD         D PY
Sbjct: 539 YDFGVRVDPASGTAPTDDEPY 559


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 149 PSVCLSPPWQRQPRPTMPPK*PCTSLWSPNDA 54
           P   L PP    PRP++PP  P ++   P+ A
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASAPPIPSKA 164


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 10.0
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 537 LSPTPPKRKFPLPSR 581
           +SPTPPKR  P+PSR
Sbjct: 18  VSPTPPKR-IPVPSR 31


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 10.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 531 PYLSPTPPKRKFPLPSRNTSNTQY 602
           P++SP+P   K  +PS N  N+ +
Sbjct: 212 PFVSPSPISMKMDMPSLNDRNSSH 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,358
Number of Sequences: 5004
Number of extensions: 49029
Number of successful extensions: 149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 539240220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)