Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_P24
(1031 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1682 - 39130696-39131705,39132355-39132583 34 0.21
04_04_0725 - 27581658-27581663,27582379-27582481,27582697-275830... 31 1.1
04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347 30 3.4
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186... 30 3.4
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122... 30 3.4
03_02_0163 - 6056959-6058989 29 6.0
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134... 29 6.0
11_01_0154 + 1281434-1281725,1281923-1281987,1282112-1282175,128... 29 7.9
06_03_0079 - 16301056-16301611,16301745-16301906,16306776-163071... 29 7.9
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581... 29 7.9
02_04_0275 - 21469391-21470650 29 7.9
02_03_0237 - 16723400-16723594,16723658-16723712,16724016-167241... 29 7.9
01_06_1377 + 36764461-36765339 29 7.9
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 33.9 bits (74), Expect = 0.21
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Frame = +3
Query: 531 PYLSPTPPKRKFPLPSRNT--SNTQYTYQPYTVEKKVPYEVKVHVDKPYEVKVPVDRPYN 704
P+ PP ++P P +++ S Y Y P + P H PY P+ P N
Sbjct: 216 PFNKFPPPSHQYPSPPQSSYHSPPPYQYTPPNSYQAPPTSYN-HPPPPYGYNSPIP-PTN 273
Query: 705 VYVPKPY--PSMLKAYQ*RTQASAYEXGP 785
Y+P PY S YQ A++Y P
Sbjct: 274 KYLPPPYYFNSPPPQYQHSPPANSYVSPP 302
>04_04_0725 -
27581658-27581663,27582379-27582481,27582697-27583025,
27583263-27583365,27583490-27583671,27584135-27584324,
27584570-27584665,27584960-27585054,27585396-27585590
Length = 432
Score = 31.5 bits (68), Expect = 1.1
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 600 YTYQPYTVEKKVPYEVKVHVDK-PYEVKVPVDRPYNVYVPKPYPSMLK 740
Y + T+ K++PYEV + +DK P+ ++ P + Y+ + P +++
Sbjct: 143 YLSKDVTIVKRIPYEVMMSMDKLPWTMRAPRKSMPDFYIDEVLPILMR 190
>04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347
Length = 137
Score = 29.9 bits (64), Expect = 3.4
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +2
Query: 98 ASLAVVAFAKEEKGTPKAVEEKKQDKR 178
ASL V AKEEK K EEKK DK+
Sbjct: 65 ASLLSVGPAKEEKKEEKKPEEKKDDKK 91
>04_03_0286 +
13915705-13915984,13916478-13917062,13918188-13918661,
13918963-13920208,13920282-13920297
Length = 866
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 55 ASFGDHNE-VHGYFGGIVGRGCLCQGG 132
A +H++ + GYF I+G CLC GG
Sbjct: 247 ACISEHSKCMDGYFAPILGYNCLCDGG 273
>01_05_0647 +
23910318-23910694,23911732-23911867,23912067-23912277,
23912357-23912724,23913793-23914081,23914173-23914372,
23914452-23914646
Length = 591
Score = 29.9 bits (64), Expect = 3.4
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +3
Query: 453 RCLFRIQSRNTSPIPSRRKYPMR*KCPYLSPTPPKRKFPLPSRNTSNTQYTYQPY 617
+CL + + P+P R +P + P PTP +P P+ + QPY
Sbjct: 37 KCLMCVCDVDPHPLPPSRHHPPPPEEPEPEPTPVNHHYPPPTTPAYSLPPPAQPY 91
>03_02_0163 - 6056959-6058989
Length = 676
Score = 29.1 bits (62), Expect = 6.0
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 429 SKLLRW*RRCL-FRIQSRNTSPIPSRRKYPMR*KCPYLSPTPPKRKFPLPSRNTSNTQYT 605
S LL W R + Q +N SP P+ + ++ P PP P P R+++ ++Y
Sbjct: 5 SSLLSWPHRAISLSFQPKNPSPSPATARVSVQDP-----PPPPSDANPSPGRSSNTSRYV 59
Query: 606 Y 608
+
Sbjct: 60 W 60
>01_05_0724 -
24612712-24612852,24612985-24613038,24613340-24613429,
24613499-24613780,24613926-24614119,24614379-24614508,
24614610-24614690,24614766-24614891,24615019-24615076,
24615319-24615380,24615753-24615803,24615946-24616065,
24616280-24616403,24616832-24616920,24617304-24617396,
24617910-24618063,24618673-24619178
Length = 784
Score = 29.1 bits (62), Expect = 6.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 531 PYLSPTPPKRKFPLPSRNTS 590
P SP PP+R+ PLPS + S
Sbjct: 12 PLPSPLPPRRRLPLPSSSAS 31
>11_01_0154 +
1281434-1281725,1281923-1281987,1282112-1282175,
1282303-1282449,1282583-1282677,1284358-1284465
Length = 256
Score = 28.7 bits (61), Expect = 7.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 164 SSLRLPSVCLSPPWQRQPRPTMPPK*PCTS 75
+++ PS+ S P R+P +PP PC+S
Sbjct: 3 AAVATPSLLFSSPTPRRPSSCLPPPPPCSS 32
>06_03_0079 -
16301056-16301611,16301745-16301906,16306776-16307134,
16307372-16307884
Length = 529
Score = 28.7 bits (61), Expect = 7.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 82 HGYFGGIVGRGCL--CQGGERHTEGSRREETRQKG 180
HGY GG GRG GG + E + R E R +G
Sbjct: 335 HGYTGGADGRGQYRGSDGGRKDGEATPRREIRVRG 369
>06_01_0778 +
5816588-5816885,5817554-5817615,5818764-5818905,
5819969-5820064,5820147-5820266,5820401-5820663,
5821507-5821617
Length = 363
Score = 28.7 bits (61), Expect = 7.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 455 PSLPPQQF*CARGVHDDRGGSRLRWQL 375
P LPP+ C VH D GG+ +RW L
Sbjct: 247 PPLPPE---CNAQVHTDYGGAAVRWGL 270
>02_04_0275 - 21469391-21470650
Length = 419
Score = 28.7 bits (61), Expect = 7.9
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = +3
Query: 474 SRNTSPIPSRRKYPMR*KCPYLSPTPPKRKFPLPSRNTSNTQ 599
+R+T+P+ R +P R + +L + KR+ P P + +++++
Sbjct: 183 ARSTAPMAPRVNFPQRTRTQFLPSSGVKRRMPSPPQVSASSE 224
>02_03_0237 -
16723400-16723594,16723658-16723712,16724016-16724126,
16724545-16724809,16725155-16725716
Length = 395
Score = 28.7 bits (61), Expect = 7.9
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Frame = +3
Query: 429 SKLLRW*RRCLFRI-QSRNTSPIPS--RRKYPMR*KCPYLSPTPPKRKFP--LPSRNTSN 593
++ + W RR + Q +T+P PS P P +SPTPP P P R +
Sbjct: 132 NQFILWHRRDIILTGQCTSTTPTPSVPNTAAPPAPPSPPISPTPPGSPLPQISPLRVPNE 191
Query: 594 TQY--TYQPYTVEKKVPYEVK 650
+Y + PY + ++P+ ++
Sbjct: 192 YEYGKPFLPYNLMCELPWSMR 212
>01_06_1377 + 36764461-36765339
Length = 292
Score = 28.7 bits (61), Expect = 7.9
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 465 RIQSRNTSPIPSRRKYPMR*KCPYLSPTPPKRKFPLP 575
R+ R SP P +YP PY P PP + P
Sbjct: 147 RLALRERSPPPPEPQYPPPSSSPYYFPPPPPPAYSAP 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,189,955
Number of Sequences: 37544
Number of extensions: 367131
Number of successful extensions: 1300
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3036070960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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